Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G15900 - ( PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) basal transcription repressor/ nucleotide binding / protein binding )
107 Proteins interacs with AT4G15900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18165 | Experimentalcoimmunoprecipitation | FSW = 0.1330
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | MOS4 (MODIFIER OF SNC14) |
AT5G47120 | Experimentalpull down | FSW = 0.0191
| Unknown | ATBI1 (BAX INHIBITOR 1) |
AT4G34430 | Experimental | FSW = 0.0216
| Class D:nucleus (p = 0.78) | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G21100 | ExperimentalcoimmunoprecipitationAffinity Capture-Western | FSW = 0.0229
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) DAMAGED DNA BINDING / PROTEIN BINDING |
AT4G05420 | Experimentaltwo hybrid | FSW = 0.0285
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING |
AT4G02150 | Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0180
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER |
AT3G01090 | Experimentaltwo hybridpull downReconstituted Complex | FSW = 0.0074
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT5G46210 | ExperimentalAffinity Capture-Western | FSW = 0.0229
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G29160 | Experimentaltwo hybridpull downReconstituted Complex | FSW = 0.0317
| Unknown | AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) PROTEIN BINDING / PROTEIN KINASE |
AT3G05010 | Experimental | FSW = 0.0291
| Unknown | TRANSMEMBRANE PROTEIN PUTATIVE |
AT5G58720 | Experimental | FSW = 0.0242
| Unknown | PRLI-INTERACTING FACTOR PUTATIVE |
YDR477W | Experimentaltwo hybrid | FSW = 0.0093
| Unknown | PRLI-INTERACTING FACTOR PUTATIVE |
ETG5579 | ExperimentalReconstituted Complex | FSW = 0.0364
| Unknown | PRLI-INTERACTING FACTOR PUTATIVE |
AT4G27090 | PredictedPhenotypic Enhancement | FSW = 0.0901
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT1G76030 | PredictedAffinity Capture-MSGene fusion method | FSW = 0.0035
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT3G08710 | PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.0408
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
AT5G50850 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0077
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT5G46860 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybrid | FSW = 0.0035
| Unknown | VAM3 SNAP RECEPTOR |
AT2G01690 | Predictedinteraction prediction | FSW = 0.0251
| Unknown | BINDING |
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT3G30390 | PredictedPhenotypic Suppression | FSW = 0.0568
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1940
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0691
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT5G09660 | Predictedtwo hybrid | FSW = 0.0106
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT3G45770 | Predictedtwo hybrid | FSW = 0.1445
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2400
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | Predictedin vivoin vivoin vitroin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectAffinity Capture-Westernin vitroin vivointeraction predictionCo-expression | FSW = 0.2786
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0980
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT5G64270 | PredictedAffinity Capture-MS | FSW = 0.1631
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction predictionCo-expression | FSW = 0.1637
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G18790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1168
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1846
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT5G46110 | Predictedtwo hybrid | FSW = 0.0328
| Unknown | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT2G42590 | Predictedtwo hybrid | FSW = 0.0984
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G32410 | Predictedtwo hybrid | FSW = 0.0498
| Unknown | CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G10540 | PredictedGene fusion method | FSW = 0.0099
| Unknown | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE PUTATIVE |
AT5G58800 | Predictedtwo hybrid | FSW = 0.0042
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.0565
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G24510 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0239
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0164
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT2G30260 | PredictedAffinity Capture-MS | FSW = 0.0658
| Unknown | U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G76300 | Predictedtwo hybrid | FSW = 0.1063
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.1923
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT3G11500 | Predictedinteraction predictionCo-expression | FSW = 0.1530
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE |
AT1G04510 | PredictedAffinity Capture-MS | FSW = 0.1566
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G62310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0694
| Unknown | RNA HELICASE PUTATIVE |
AT2G34450 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.0793
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.1025
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G55770 | Predictedtwo hybrid | FSW = 0.0069
| Unknown | LIM DOMAIN-CONTAINING PROTEIN |
AT1G20580 | PredictedAffinity Capture-MS | FSW = 0.2045
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G47210 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | MYB FAMILY TRANSCRIPTION FACTOR |
AT4G30220 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1477
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G20490 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | NOP10 RNA BINDING |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.0889
| Unknown | AAA-TYPE ATPASE FAMILY |
AT1G10060 | Predictedtwo hybrid | FSW = 0.1007
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT3G09810 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.1073
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G02530 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0130
| Unknown | CHAPERONIN PUTATIVE |
AT5G28060 | Predictedtwo hybrid | FSW = 0.0842
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT3G25840 | PredictedSynthetic Lethality | FSW = 0.0440
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0598
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G08910 | Predictedtwo hybrid | FSW = 0.0197
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT1G12130 | PredictedPhenotypic Enhancement | FSW = 0.0348
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1311
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.0614
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G29230 | Predictedtwo hybrid | FSW = 0.0893
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G22480 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0077
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0495
| Unknown | UNKNOWN PROTEIN |
AT2G29190 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1516
| Unknown | APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING |
AT2G46650 | Predictedtwo hybrid | FSW = 0.2273
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
AT3G05960 | PredictedPhenotypic Enhancement | FSW = 0.0385
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G18860 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G25585 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT3G27730 | Predictedtwo hybrid | FSW = 0.0360
| Unknown | RCK (ROCK-N-ROLLERS) ATP BINDING / ATP-DEPENDENT HELICASE/ DNA HELICASE |
AT3G61210 | Predictedtwo hybrid | FSW = 0.1567
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G10580 | PredictedAffinity Capture-MS | FSW = 0.0947
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G12880 | Predictedinterologs mapping | FSW = 0.0476
| Unknown | ATNUDT12 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 12) HYDROLASE |
AT1G14640 | PredictedAffinity Capture-MS | FSW = 0.1686
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G17070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2119
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G66950 | Predictedtwo hybrid | FSW = 0.0812
| Unknown | PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G80930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2033
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G19160 | PredictedPhenotypic Enhancement | FSW = 0.0526
| Unknown | UNKNOWN PROTEIN |
AT2G27340 | PredictedPhenotypic Enhancement | FSW = 0.0860
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT2G32600 | PredictedAffinity Capture-MS | FSW = 0.1477
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT3G09800 | PredictedPhenotypic Enhancement | FSW = 0.0797
| Unknown | PROTEIN BINDING |
AT3G14740 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | PHD FINGER FAMILY PROTEIN |
AT3G55220 | PredictedAffinity Capture-MS | FSW = 0.2125
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G21110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1596
| Unknown | G10 FAMILY PROTEIN |
AT4G21660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1986
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT5G06160 | PredictedAffinity Capture-MS | FSW = 0.1737
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G28740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2708
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT5G41770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2038
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G52210 | PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.0513
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT5G66410 | PredictedPhenotypic Enhancement | FSW = 0.0203
| Unknown | PLP3B (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT4G25960 | Predictedtwo hybrid | FSW = 0.0233
| Unknown | PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G30820 | Predictedtwo hybrid | FSW = 0.1433
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED / CDK-ACTIVATING KINASE ASSEMBLY FACTOR-RELATED |
AT4G33950 | Predictedtwo hybrid | FSW = 0.0581
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G38110 | Predictedtwo hybrid | FSW = 0.1513
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G38290 | Predictedtwo hybrid | FSW = 0.0865
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G63650 | Predictedtwo hybrid | FSW = 0.0402
| Unknown | SNRK25 (SNF1-RELATED PROTEIN KINASE 25) KINASE |
AT5G64240 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | ATMC3 (METACASPASE 3) CYSTEINE-TYPE ENDOPEPTIDASE |
AT3G16650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2848
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT5G40870 | PredictedGene fusion method | FSW = 0.0097
| Unknown | ATUK/UPRT1 (URIDINE KINASE/URACIL PHOSPHORIBOSYLTRANSFERASE 1) ATP BINDING / KINASE/ URACIL PHOSPHORIBOSYLTRANSFERASE/ URIDINE KINASE |
AT2G01450 | PredictedGene fusion method | FSW = 0.0092
| Unknown | ATMPK17 MAP KINASE |
AT3G06430 | PredictedGene fusion method | FSW = 0.0191
| Unknown | EMB2750 (EMBRYO DEFECTIVE 2750) |
AT3G51320 | PredictedGene fusion method | FSW = 0.0197
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 16 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS BINDING (TAIRAT3G628901) HAS 12158 BLAST HITS TO 4373 PROTEINS IN 95 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 23 FUNGI - 18 PLANTS - 12009 VIRUSES - 0 OTHER EUKARYOTES - 108 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454