Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16360 - ( AMP-activated protein kinase )
46 Proteins interacs with AT4G16360Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G22770 | Experimental | FSW = 0.0172
| Unknown | GI (GIGANTEA) |
AT5G03840 | Experimental | FSW = 0.0343
| Unknown | TFL1 (TERMINAL FLOWER 1) PHOSPHATIDYLETHANOLAMINE BINDING |
AT3G29160 | Experimentaltwo hybridtwo hybridAffinity Capture-Western | FSW = 0.1728
| Unknown | AKIN11 (ARABIDOPSIS SNF1 KINASE HOMOLOG 11) PROTEIN BINDING / PROTEIN KINASE |
AT3G48530 | Experimentaltwo hybrid | FSW = 0.0655
| Unknown | KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) |
AT4G35900 | Experimental | FSW = 0.0413
| Unknown | FD DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G21170 | Experimental | FSW = 0.2419
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT4G08455 | Experimental | FSW = 0.0193
| Unknown | BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT5G19000 | Experimental | FSW = 0.0225
| Unknown | ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING |
AT1G09020 | Experimentaltwo hybridReconstituted Complexin vitro | FSW = 0.0656
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT3G01090 | Experimentaltwo hybridAffinity Capture-Western | FSW = 0.0467
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
YGL115W | Experimentaltwo hybrid | FSW = 0.0950
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
YDR477W | Experimentaltwo hybrid | FSW = 0.1394
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G15710 | PredictedAffinity Capture-MS | FSW = 0.0359
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT5G50850 | Predictedtwo hybridtwo hybrid | FSW = 0.0171
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT4G01840 | PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0215
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G20960 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0318
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G16630 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | RAD4 DAMAGED DNA BINDING |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0261
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT5G49460 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) ATP CITRATE SYNTHASE |
AT5G14170 | Predictedtwo hybridtwo hybrid | FSW = 0.0111
| Unknown | CHC1 |
AT4G39160 | PredictedPhenotypic Suppression | FSW = 0.0418
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT3G49920 | PredictedPhenotypic Enhancement | FSW = 0.0469
| Unknown | VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL |
AT1G69220 | Predictedinterologs mapping | FSW = 0.0167
| Unknown | SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.0111
| Unknown | ARA6 GTP BINDING / GTPASE |
AT5G59720 | Predictedsynthetic growth defectsynthetic growth defectinterologs mappinginterologs mappingsynthetic growth defect | FSW = 0.0546
| Unknown | HSP182 (HEAT SHOCK PROTEIN 182) |
AT4G13780 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | METHIONINE--TRNA LIGASE PUTATIVE / METHIONYL-TRNA SYNTHETASE PUTATIVE / METRS PUTATIVE |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G14710 | Predictedtwo hybridtwo hybrid | FSW = 0.0327
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT5G08420 | Predictedtwo hybridtwo hybrid | FSW = 0.0074
| Unknown | RNA BINDING |
AT2G35920 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | HELICASE DOMAIN-CONTAINING PROTEIN |
AT1G08910 | PredictedPhenotypic Enhancement | FSW = 0.0433
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.0377
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G10360 | PredictedPhenotypic Enhancement | FSW = 0.0447
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT2G18170 | PredictedPhenotypic Enhancement | FSW = 0.0121
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0350
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defect | FSW = 0.0247
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.0269
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G04420 | Predictedco-fractionationCo-fractionation | FSW = 0.0620
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT5G07070 | Predictedtwo hybridco-fractionationCo-fractionation | FSW = 0.0769
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G15070 | PredictedAffinity Capture-MS | FSW = 0.0039
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G44740 | PredictedAffinity Capture-MS | FSW = 0.0453
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT3G45240 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0344
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454