Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16520 - ( ATG8F (autophagy 8f) microtubule binding )
26 Proteins interacs with AT4G16520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G45170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1957
| Class C:vacuolecytosolcytoskeleton | ATATG8E MICROTUBULE BINDING |
AT4G21980 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1475
| Class C:vacuolecytosolcytoskeleton | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G15580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3974
| Class C:vacuolecytoskeleton | APG8H (AUTOPHAGY 8H) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE/ MICROTUBULE BINDING |
AT3G06420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3773
| Class C:vacuolecytoskeleton | ATG8H (AUTOPHAGY 8H) MICROTUBULE BINDING |
AT3G60640 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3750
| Class C:vacuolecytoskeleton | ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING |
AT2G05630 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4664
| Class C:vacuolecytoskeleton | AUTOPHAGY 8D (APG8D) |
AT1G62040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4717
| Class C:vacuolecytoskeleton | ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING |
AT4G04620 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3974
| Class C:vacuolecytoskeleton | ATG8B (AUTOPHAGY 8B) MICROTUBULE BINDING |
AT4G04910 | Predictedin vivoin vitro | FSW = 0.0074
| Class C:vacuole | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G10450 | Predictedtwo hybrid | FSW = 0.0050
| Class C:cytosol | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G57210 | Predictedtwo hybrid | FSW = 0.0324
| Class C:cytoskeleton | MICROTUBULE-ASSOCIATED PROTEIN-RELATED |
AT5G57870 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT5G56290 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT2G28910 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G10140 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1379
| Unknown | RECA3 (RECA HOMOLOG 3) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G15400 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G52590 | Predictedtwo hybrid | FSW = 0.0750
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G46750 | Predictedtwo hybrid | FSW = 0.0522
| Unknown | AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G61970 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED |
AT1G05350 | Predictedtwo hybrid | FSW = 0.0690
| Unknown | THIF FAMILY PROTEIN |
AT1G09900 | PredictedAffinity Capture-MS | FSW = 0.0460
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT3G53930 | Predictedtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.0613
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G20990 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0334
| Unknown | B73 MOLYBDENUM ION BINDING |
AT5G39710 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | EMB2745 (EMBRYO DEFECTIVE 2745) |
AT5G61500 | Predictedin vivoAffinity Capture-MS | FSW = 0.1109
| Unknown | ATG3 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454