Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16520 - ( ATG8F (autophagy 8f) microtubule binding )

26 Proteins interacs with AT4G16520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G45170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1957

Class C:

vacuole

cytosol

cytoskeleton

ATATG8E MICROTUBULE BINDING
AT4G21980

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1475

Class C:

vacuole

cytosol

cytoskeleton

APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT3G15580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3974

Class C:

vacuole

cytoskeleton

APG8H (AUTOPHAGY 8H) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE/ MICROTUBULE BINDING
AT3G06420

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3773

Class C:

vacuole

cytoskeleton

ATG8H (AUTOPHAGY 8H) MICROTUBULE BINDING
AT3G60640

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.3750

Class C:

vacuole

cytoskeleton

ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING
AT2G05630

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4664

Class C:

vacuole

cytoskeleton

AUTOPHAGY 8D (APG8D)
AT1G62040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4717

Class C:

vacuole

cytoskeleton

ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING
AT4G04620

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3974

Class C:

vacuole

cytoskeleton

ATG8B (AUTOPHAGY 8B) MICROTUBULE BINDING
AT4G04910

Predicted

in vivo

in vitro

FSW = 0.0074

Class C:

vacuole

NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G10450

Predicted

two hybrid

FSW = 0.0050

Class C:

cytosol

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G57210

Predicted

two hybrid

FSW = 0.0324

Class C:

cytoskeleton

MICROTUBULE-ASSOCIATED PROTEIN-RELATED
AT5G57870

Predicted

Affinity Capture-MS

FSW = 0.0400

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT5G56290

Predicted

two hybrid

FSW = 0.0203

Unknown

PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING
AT2G28910

Predicted

two hybrid

FSW = 0.0462

Unknown

CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G10140

Predicted

two hybrid

Affinity Capture-MS

FSW = 0.1379

Unknown

RECA3 (RECA HOMOLOG 3) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G15400

Predicted

two hybrid

FSW = 0.0131

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G52590Predicted

two hybrid

FSW = 0.0750

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT5G46750

Predicted

two hybrid

FSW = 0.0522

Unknown

AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT5G61970

Predicted

two hybrid

FSW = 0.0571

Unknown

SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED
AT1G05350

Predicted

two hybrid

FSW = 0.0690

Unknown

THIF FAMILY PROTEIN
AT1G09900

Predicted

Affinity Capture-MS

FSW = 0.0460

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT2G24050

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT3G53930

Predicted

two hybrid

in vivo

in vitro

Affinity Capture-MS

FSW = 0.0613

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G20990

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0334

Unknown

B73 MOLYBDENUM ION BINDING
AT5G39710

Predicted

Affinity Capture-MS

FSW = 0.0334

Unknown

EMB2745 (EMBRYO DEFECTIVE 2745)
AT5G61500

Predicted

in vivo

Affinity Capture-MS

FSW = 0.1109

Unknown

ATG3

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454