Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16660 - ( heat shock protein 70 putative / HSP70 putative )
91 Proteins interacs with AT4G16660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18140 | Predictedtwo hybrid | FSW = 0.0234
| Class C:vacuole | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.1121
| Class C:vacuole | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G07090 | PredictedPhenotypic Enhancement | FSW = 0.1072
| Class C:vacuole | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0547
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedSynthetic Lethality | FSW = 0.1958
| Class C:vacuole | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0891
| Class C:plastid | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G55400 | PredictedPhenotypic Enhancement | FSW = 0.0776
| Class C:plastid | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.1815
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G51820 | PredictedPhenotypic Suppression | FSW = 0.1917
| Class C:plastid | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.1112
| Class C:plastid | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G02600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1337
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT5G58640 | PredictedPhenotypic Enhancement | FSW = 0.1314
| Unknown | SELENOPROTEIN-RELATED |
AT1G04750 | PredictedPhenotypic Enhancement | FSW = 0.1907
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT5G23900 | PredictedPhenotypic Enhancement | FSW = 0.0546
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT5G26340 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.1179
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.1406
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT2G37790 | PredictedPhenotypic Enhancement | FSW = 0.2253
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G80050 | PredictedPhenotypic Suppression | FSW = 0.1789
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT4G18800 | PredictedPhenotypic Enhancement | FSW = 0.1991
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT3G60180 | PredictedSynthetic Lethality | FSW = 0.2133
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT3G52250 | PredictedPhenotypic Enhancement | FSW = 0.3096
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.1415
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.1659
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G56110 | PredictedPhenotypic Enhancement | FSW = 0.0748
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT5G19310 | PredictedPhenotypic Suppression | FSW = 0.0198
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.1975
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G72560 | PredictedPhenotypic Enhancement | FSW = 0.0675
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.3211
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G30160 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.3487
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.1751
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.1774
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G19980 | PredictedPhenotypic Enhancement | FSW = 0.2620
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.1415
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.2776
| Unknown | ARA6 GTP BINDING / GTPASE |
AT4G39200 | PredictedSynthetic Lethality | FSW = 0.3520
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G29540 | PredictedPhenotypic Enhancement | FSW = 0.1532
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1473
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G16420 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2050
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G04500 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 47 |
AT1G13580 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethality | FSW = 0.3512
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G20693 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3535
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G23460 | PredictedPhenotypic Enhancement | FSW = 0.2359
| Unknown | POLYGALACTURONASE |
AT1G27320 | PredictedPhenotypic Suppression | FSW = 0.1183
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G31300 | PredictedPhenotypic Enhancement | FSW = 0.0271
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G196452) HAS 478 BLAST HITS TO 478 PROTEINS IN 104 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 269 FUNGI - 98 PLANTS - 80 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.2104
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G27170 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | TTN7 (TITAN7) ATP BINDING / PROTEIN BINDING |
AT2G33560 | PredictedSynthetic Lethality | FSW = 0.1312
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0366
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G37420 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.3957
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G38490 | PredictedPhenotypic Enhancement | FSW = 0.1129
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G02000 | PredictedPhenotypic Enhancement | FSW = 0.2730
| Unknown | ROXY1 DISULFIDE OXIDOREDUCTASE |
AT3G62760 | PredictedSynthetic Lethality | FSW = 0.0939
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT1G02100 | PredictedPhenotypic Suppression | FSW = 0.1975
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G10090 | Predictedsynthetic growth defect | FSW = 0.1053
| Unknown | UNKNOWN PROTEIN |
AT1G21370 | PredictedPhenotypic Enhancement | FSW = 0.2376
| Unknown | UNKNOWN PROTEIN |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.2522
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0913
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G31170 | PredictedPhenotypic Enhancement | FSW = 0.1546
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.2685
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G59730 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | ATH7 (THIOREDOXIN H-TYPE 7) |
AT1G68020 | PredictedPhenotypic Enhancement | FSW = 0.2365
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G74810 | PredictedSynthetic Lethality | FSW = 0.0288
| Unknown | BOR5 ANION EXCHANGER |
AT1G75380 | PredictedPhenotypic Enhancement | FSW = 0.0290
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0583
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.2057
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.3434
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT3G09640 | PredictedPhenotypic Enhancement | FSW = 0.3146
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G12670 | PredictedSynthetic Rescue | FSW = 0.0643
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G18660 | Predictedsynthetic growth defect | FSW = 0.1901
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.2563
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.2003
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | Predictedsynthetic growth defect | FSW = 0.2180
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G53030 | Predictedsynthetic growth defect | FSW = 0.1669
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT3G59540 | PredictedPhenotypic Suppression | FSW = 0.1991
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.1878
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27130 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.3465
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | PredictedPhenotypic EnhancementSynthetic Rescuetwo hybrid | FSW = 0.1377
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT4G38250 | PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.3243
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G01430 | PredictedPhenotypic Enhancement | FSW = 0.1786
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G10830 | PredictedPhenotypic Suppression | FSW = 0.1002
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT5G14060 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.3942
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G14180 | PredictedSynthetic LethalityPhenotypic Suppression | FSW = 0.2253
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G16980 | Predictedsynthetic growth defect | FSW = 0.2801
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G42600 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MS | FSW = 0.0800
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT5G45620 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.2793
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G20870 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.1188
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G36050 | PredictedPhenotypic Suppression | FSW = 0.1947
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.2437
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.2566
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G64760 | PredictedPhenotypic Enhancement | FSW = 0.3440
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G39230 | PredictedGene fusion method | FSW = 0.0106
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454