Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16710 - ( glycosyltransferase family protein 28 )
19 Proteins interacs with AT4G16710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G56000 | PredictedPhenotypic Enhancement | FSW = 0.0137
| Unknown | HEAT SHOCK PROTEIN 81-4 (HSP81-4) |
AT1G22170 | PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT2G39480 | PredictedPhenotypic Enhancement | FSW = 0.1068
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0625
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G77950 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT1G01020 | PredictedAffinity Capture-Western | FSW = 0.1115
| Unknown | ARV1 |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT3G10070 | Predictedtwo hybridtwo hybrid | FSW = 0.0172
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | UNKNOWN PROTEIN |
AT1G08260 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.1088
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G23070 | PredictedPhenotypic Enhancement | FSW = 0.0354
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G10580 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0319
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G56640 | PredictedSynthetic Lethality | FSW = 0.0196
| Unknown | EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN |
AT4G18230 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationCo-purification | FSW = 0.0726
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S OLIGOSACCHARIDE BIOSYNTHESIS PROTEIN ALG14 LIKE (INTERPROIPR013969) HAS 453 BLAST HITS TO 453 PROTEINS IN 176 SPECIES ARCHAE - 4 BACTERIA - 199 METAZOA - 76 FUNGI - 83 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 63 (SOURCE NCBI BLINK) |
AT4G24040 | PredictedPhenotypic Enhancement | FSW = 0.1633
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT5G11570 | Predictedinterologs mappinginterologs mapping | FSW = 0.2130
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G13840 | PredictedPhenotypic Enhancement | FSW = 0.0684
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454