Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G16720 - ( 60S ribosomal protein L15 (RPL15A) )
22 Proteins interacs with AT4G16720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G36050 | Predictedtwo hybrid | FSW = 0.2155
| Class C:vacuole | UNKNOWN PROTEIN |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0091
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0085
| Class C:plasma membrane | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT4G17390 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1936
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT3G16810 | PredictedAffinity Capture-MS | FSW = 0.0425
| Unknown | APUM24 (ARABIDOPSIS PUMILIO 24) RNA BINDING / BINDING |
AT5G48240 | PredictedAffinity Capture-MS | FSW = 0.0817
| Unknown | UNKNOWN PROTEIN |
AT4G22380 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0624
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT3G55410 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT2G30160 | Predictedtwo hybrid | FSW = 0.0124
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G65750 | PredictedAffinity Capture-MS | FSW = 0.0765
| Unknown | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT1G07030 | Predictedtwo hybrid | FSW = 0.1701
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G22200 | Predictedtwo hybrid | FSW = 0.0847
| Unknown | UNKNOWN PROTEIN |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G18660 | Predictedtwo hybridtwo hybrid | FSW = 0.0462
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G46720 | Predictedtwo hybridtwo hybrid | FSW = 0.0315
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S BUTIROSIN BIOSYNTHESIS BTRG-LIKE (INTERPROIPR013024) AIG2-LIKE (INTERPROIPR009288) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G029101) HAS 249 BLAST HITS TO 249 PROTEINS IN 85 SPECIES ARCHAE - 5 BACTERIA - 65 METAZOA - 121 FUNGI - 0 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 17 (SOURCE NCBI BLINK) |
AT4G36630 | Predictedtwo hybridtwo hybrid | FSW = 0.0301
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G70290 | Predictedbiochemical | FSW = 0.0096
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G18905 | PredictedAffinity Capture-MS | FSW = 0.0330
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G18900 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G12600 | PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0847
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454