Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G16760 - ( ACX1 (ACYL-COA OXIDASE 1) acyl-CoA oxidase )
34 Proteins interacs with AT4G16760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G06860 | PredictedShared biological functionCo-expression | FSW = 0.0861
| Class C:peroxisome | MFP2 (MULTIFUNCTIONAL PROTEIN 2) 3-HYDROXYACYL-COA DEHYDROGENASE/ ENOYL-COA HYDRATASE |
AT5G56290 | Predictedtwo hybridReconstituted Complexinteraction prediction | FSW = 0.0566
| Class C:peroxisome | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT5G42890 | Predictedin vitroAffinity Capture-MS | FSW = 0.0527
| Class C:peroxisome | SCP2 (STEROL CARRIER PROTEIN 2) OXIDOREDUCTASE/ STEROL CARRIER |
AT5G65110 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2290
| Class C:peroxisome | ACX2 (ACYL-COA OXIDASE 2) ACYL-COA OXIDASE |
AT1G06290 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1189
| Class C:peroxisome | ACX3 (ACYL-COA OXIDASE 3) ACYL-COA OXIDASE |
AT3G51840 | PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.0965
| Class C:peroxisome | ACX4 (ACYL-COA OXIDASE 4) ACYL-COA OXIDASE/ OXIDOREDUCTASE |
AT2G35690 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1837
| Class C:peroxisome | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G13940 | Predictedtwo hybrid | FSW = 0.0412
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
AT5G22440 | Predictedtwo hybrid | FSW = 0.0108
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AC) |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | UNKNOWN PROTEIN |
AT5G12480 | Predictedbiochemical | FSW = 0.0044
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G47550 | Predictedtwo hybrid | FSW = 0.0789
| Unknown | UNKNOWN PROTEIN |
AT4G15000 | Predictedtwo hybrid | FSW = 0.0245
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT3G17750 | Predictedtwo hybrid | FSW = 0.0154
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G04990 | Predictedtwo hybrid | FSW = 0.0483
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
AT3G55930 | Predictedtwo hybrid | FSW = 0.0197
| Unknown | RNA SPLICING FACTOR-RELATED |
AT4G09800 | Predictedtwo hybrid | FSW = 0.0169
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G17020 | Predictedtwo hybrid | FSW = 0.0131
| Unknown | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT4G02110 | Predictedtwo hybrid | FSW = 0.0721
| Unknown | TRANSCRIPTION COACTIVATOR |
AT3G54230 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G03910 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
AT1G16590 | Predictedtwo hybrid | FSW = 0.0962
| Unknown | REV7 DNA BINDING |
AT1G27880 | Predictedtwo hybrid | FSW = 0.0592
| Unknown | ATP-DEPENDENT DNA HELICASE PUTATIVE |
AT1G56450 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G11000 | Predictedtwo hybrid | FSW = 0.0592
| Unknown | ATMAK10 ACETYLTRANSFERASE |
AT2G17250 | Predictedtwo hybrid | FSW = 0.0189
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
AT4G18465 | Predictedtwo hybrid | FSW = 0.0364
| Unknown | RNA HELICASE PUTATIVE |
AT5G40040 | Predictedtwo hybrid | FSW = 0.0282
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E) |
AT5G41770 | Predictedtwo hybrid | FSW = 0.0543
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G47650 | Predictedtwo hybrid | FSW = 0.0676
| Unknown | ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2) ADP-RIBOSE DIPHOSPHATASE/ NAD OR NADH BINDING / HYDROLASE |
AT5G49930 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | EMB1441 (EMBRYO DEFECTIVE 1441) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G20030 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | AGENET DOMAIN-CONTAINING PROTEIN |
AT3G06483 | Predictedbiochemical | FSW = 0.0092
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT1G06310 | PredictedGene fusion methodCo-expression | FSW = 0.0806
| Unknown | ACX6 (ACYL-COA OXIDASE 6) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454