Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17020 - ( transcription factor-related )
28 Proteins interacs with AT4G17020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10450 | Predictedtwo hybrid | FSW = 0.0046
| Class C:nucleus | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT4G12610 | PredictedCo-purificationReconstituted Complex | FSW = 0.1445
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G02140 | Predictedtwo hybridtwo hybrid | FSW = 0.0645
| Class C:nucleus | MAGO (MAGO NASHI) PROTEIN BINDING |
AT5G41370 | Predictedtwo hybridinteraction prediction | FSW = 0.1705
| Class C:nucleus | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT3G54280 | PredictedCo-purification | FSW = 0.0388
| Class C:nucleus | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G03190 | PredictedCo-purificationCo-purification | FSW = 0.1450
| Class C:nucleus | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT4G20340 | PredictedReconstituted ComplexCo-purificationin vitro | FSW = 0.2367
| Class C:nucleus | RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G03280 | Predictedin vitroCo-expression | FSW = 0.1083
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G18340 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4132
| Class C:nucleus | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT3G13445 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0299
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0457
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT1G55520 | PredictedCo-purificationReconstituted ComplexAffinity Capture-Western | FSW = 0.0862
| Class C:nucleus | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT1G05055 | PredictedAffinity Capture-MSCo-purification | FSW = 0.2989
| Class C:nucleus | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G55750 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.2922
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT5G41360 | Predictedin vivoin vitroCo-purificationCo-purificationAffinity Capture-MStwo hybrid | FSW = 0.3667
| Class C:nucleus | XPB2 ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT4G35800 | PredictedCo-purificationReconstituted Complex | FSW = 0.1019
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G53110 | PredictedAffinity Capture-Western | FSW = 0.0817
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT5G41210 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) GLUTATHIONE TRANSFERASE |
AT1G16190 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0876
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G38470 | PredictedAffinity Capture-Western | FSW = 0.0420
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G37055 | Predictedtwo hybridtwo hybrid | FSW = 0.0287
| Unknown | SEF (SERRATED LEAVES AND EARLY FLOWERING) |
AT5G38050 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | UNKNOWN PROTEIN |
AT1G12400 | Predictedin vitroin vitro | FSW = 0.3459
| Unknown | DNA BINDING |
AT2G44150 | PredictedPhenotypic Enhancement | FSW = 0.0577
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G21060 | PredictedPhenotypic Enhancement | FSW = 0.0496
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0139
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G50320 | PredictedPhenotypic Enhancement | FSW = 0.0255
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT2G16140 | Predictedtwo hybrid | FSW = 0.1032
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454