Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17170 - ( RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP binding / GTPase )
41 Proteins interacs with AT4G17170| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT2G01950
   | Experimentalphage display | FSW = 0.0054
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
| AT3G42050
| Predictedtwo hybridtwo hybrid | FSW = 0.0173
| Class C:vacuoleplasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
| AT5G45750
| PredictedPhylogenetic profile method | FSW = 0.7744
| Class C:vacuoleplasma membrane | ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING |
| AT4G19640
| PredictedPhylogenetic profile method | FSW = 0.2139
| Class C:vacuoleplasma membrane | ARA7 GTP BINDING |
| AT3G46060
| PredictedPhylogenetic profile method | FSW = 0.7007
| Class C:vacuoleplasma membrane | ATRAB8A GTP BINDING |
| AT2G44610
| PredictedPhylogenetic profile method | FSW = 0.3328
| Class C:vacuoleplasma membrane | RAB6A GTP BINDING / PROTEIN BINDING |
| AT5G47520
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7744
| Class C:vacuoleplasma membrane | ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING |
| AT1G16920
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6239
| Class C:vacuoleplasma membrane | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
| AT3G07180
| Predictedtwo hybrid | FSW = 0.0173
| Class C:vacuole | GPI TRANSAMIDASE COMPONENT PIG-S-RELATED |
| AT2G21880
| PredictedPhylogenetic profile method | FSW = 0.2331
| Class C:vacuole | ATRAB7A GTP BINDING |
| AT1G28550
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7480
| Class C:plasma membrane | ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING |
| AT5G59840
| PredictedPhylogenetic profile method | FSW = 0.3378
| Class C:plasma membrane | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
| AT1G07410
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7523
| Class C:plasma membrane | ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT4G18430
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6512
| Class C:plasma membrane | ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING |
| AT4G39990
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7353
| Class C:plasma membrane | RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING |
| AT3G46830
| PredictedPhylogenetic profile method | FSW = 0.7179
| Class C:plasma membrane | ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING |
| AT5G59150
| PredictedPhylogenetic profile method | FSW = 0.7849
| Class C:plasma membrane | ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING |
| AT1G06400
| PredictedPhylogenetic profile method | FSW = 0.6382
| Class C:plasma membrane | ARA-2 GTP BINDING |
| AT3G53610
| PredictedPhylogenetic profile method | FSW = 0.6666
| Class C:plasma membrane | ATRAB8 GTP BINDING |
| AT3G09900
| PredictedPhylogenetic profile method | FSW = 0.3151
| Class C:plasma membrane | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT1G09630
| PredictedPhylogenetic profile method | FSW = 0.7021
| Class C:plasma membrane | ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING |
| AT2G43130
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7728
| Class C:plasma membrane | ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING |
| AT3G07410
| PredictedPhylogenetic profile method | FSW = 0.7353
| Class C:plasma membrane | ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING |
| AT4G18800
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3354
| Class C:plasma membrane | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
| AT1G73640
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7417
| Class C:plasma membrane | ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING |
| AT5G65270
| PredictedPhylogenetic profile method | FSW = 0.7043
| Class C:plasma membrane | ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING |
| AT4G35860
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7956
| Unknown | ATGB2 (GTP-BINDING 2) GTP BINDING |
| AT1G01200
| PredictedPhylogenetic profile method | FSW = 0.7800
| Unknown | ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING |
| AT5G64990
| PredictedPhylogenetic profile method | FSW = 0.6019
| Unknown | ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING |
| AT5G03520
| PredictedPhylogenetic profile method | FSW = 0.5523
| Unknown | ATRAB8C GTP BINDING |
| AT5G41940
| Predictedtwo hybrid | FSW = 0.0203
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT5G09550
| Predictedin vitroAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.1923
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
| AT5G60860
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7632
| Unknown | ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING |
| AT2G31680
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7667
| Unknown | ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING |
| AT3G15060
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7632
| Unknown | ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING |
| AT3G12160
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6928
| Unknown | RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING |
| AT2G33870
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7632
| Unknown | ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING |
| AT5G47960
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7632
| Unknown | ATRABA4C GTP BINDING |
| AT4G17160
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.8453
| Unknown | ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING |
| AT3G09910
| PredictedPhylogenetic profile method | FSW = 0.4642
| Unknown | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING |
| AT5G10260
| PredictedPhylogenetic profile method | FSW = 0.1233
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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