Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17380 - ( MSH4 (MUTS HOMOLOG 4) ATP binding / damaged DNA binding / mismatched DNA binding )
51 Proteins interacs with AT4G17380Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G59760 | Experimentalconfocal microscopy | FSW = 0.0234
| Unknown | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
AT5G20850 | Experimentalconfocal microscopy | FSW = 0.0163
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT4G35520 | Experimentalcoimmunoprecipitation | FSW = 0.0327
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0158
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2887
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1625
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0152
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2938
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.2833
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G75840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3398
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2833
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.1882
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.3122
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G43810 | PredictedReconstituted Complexinteraction prediction | FSW = 0.0052
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | PredictedReconstituted Complex | FSW = 0.0058
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT5G45400 | Predictedin vitroin vivo | FSW = 0.0312
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.0391
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.2460
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G47720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0860
| Unknown | ACETYL-COA C-ACYLTRANSFERASE PUTATIVE / 3-KETOACYL-COA THIOLASE PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.2237
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT4G27070 | PredictedReconstituted Complex | FSW = 0.0111
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT5G19910 | PredictedPhenotypic Enhancement | FSW = 0.0076
| Unknown | SOH1 FAMILY PROTEIN |
AT1G10280 | PredictedAffinity Capture-MS | FSW = 0.1698
| Unknown | UNKNOWN PROTEIN |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2279
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4331
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2387
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3210
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.2021
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G12200 | PredictedReconstituted Complex | FSW = 0.0224
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G20475 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0503
| Unknown | MSH5 (MUTS-HOMOLOGUE 5) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.1289
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3158
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3418
| Unknown | HISTONE H4 |
AT1G18090 | PredictedPhenotypic Enhancement | FSW = 0.0286
| Unknown | EXONUCLEASE PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.2316
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.3007
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.2114
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2860
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G29170 | PredictedPhenotypic Enhancement | FSW = 0.0364
| Unknown | ATMND1 |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2823
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G13780 | PredictedPhenotypic Suppression | FSW = 0.0136
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G24670 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0365
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G45600 | PredictedPhenotypic Suppression | FSW = 0.0118
| Unknown | GAS41 PROTEIN BINDING |
AT5G54800 | Predictedinterologs mapping | FSW = 0.0457
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1577
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT4G09140 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0678
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT5G49510 | Predictedin vitroin vivo | FSW = 0.0234
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT1G29630 | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | NUCLEASE |
AT5G40170 | PredictedGene fusion method | FSW = 0.0370
| Unknown | ATRLP54 (RECEPTOR LIKE PROTEIN 54) KINASE/ PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454