Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17510 - ( UCH3 (UBIQUITIN C-TERMINAL HYDROLASE 3) ubiquitin thiolesterase )
22 Proteins interacs with AT4G17510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33140 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.0972
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45200 | PredictedPhenotypic SuppressionAffinity Capture-WesternReconstituted Complex | FSW = 0.0430
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0135
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G57050 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1519
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0069
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G23410 | PredictedbiochemicalEnriched domain pairCo-expression | FSW = 0.1394
| Unknown | UBIQUITIN EXTENSION PROTEIN PUTATIVE / 40S RIBOSOMAL PROTEIN S27A (RPS27AA) |
AT1G55860 | Predictedtwo hybrid | FSW = 0.0677
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT1G71230 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0194
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT1G11980 | Predictedin vitrotwo hybrid | FSW = 0.0533
| Unknown | RUB3 (UBIQUITIN-RELATED PROTEIN 3) |
AT3G57870 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT4G09200 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT1G05660 | PredictedAffinity Capture-Western | FSW = 0.0729
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G34580 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0096
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G49520 | PredictedAffinity Capture-Western | FSW = 0.0564
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G28360 | PredictedPhenotypic Enhancement | FSW = 0.0330
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G47110 | Predictedbiochemical | FSW = 0.0718
| Unknown | UBQ6 PROTEIN BINDING |
AT3G44190 | PredictedAffinity Capture-Western | FSW = 0.1553
| Unknown | PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE FAMILY PROTEIN |
AT3G52590 | Predictedbiochemical | FSW = 0.0277
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G05320 | PredictedReconstituted ComplexEnriched domain pairCo-expression | FSW = 0.0558
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT5G26250 | PredictedPhenotypic Enhancementtwo hybridtwo hybridAffinity Capture-Westernco-fractionationCo-fractionationReconstituted ComplexPhenotypic Enhancement | FSW = 0.0621
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G66640 | Predictedbiochemical | FSW = 0.0068
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G37830 | PredictedAffinity Capture-Western | FSW = 0.0541
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454