Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17530 - ( ATRAB1C GTP binding )

45 Proteins interacs with AT4G17530
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G45750

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8837

Class C:

vacuole

plasma membrane

nucleus

ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G02130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5661

Class C:

vacuole

plasma membrane

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT5G47520

Predicted

Phylogenetic profile method

FSW = 0.8105

Class C:

vacuole

plasma membrane

ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT1G52280

Predicted

Phylogenetic profile method

FSW = 0.3883

Class C:

vacuole

plasma membrane

ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING
AT3G46060

Predicted

Phylogenetic profile method

FSW = 0.8783

Class C:

vacuole

plasma membrane

ATRAB8A GTP BINDING
AT1G16920

Predicted

Phylogenetic profile method

FSW = 0.6138

Class C:

vacuole

plasma membrane

ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING
AT4G09720

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3277

Class C:

vacuole

RAS-RELATED GTP-BINDING PROTEIN PUTATIVE
AT1G22740

Predicted

Phylogenetic profile method

FSW = 0.3003

Class C:

vacuole

RABG3B GTP BINDING
AT5G47200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8963

Class C:

plasma membrane

ATRAB1A GTP BINDING
AT1G43890

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9443

Class C:

plasma membrane

ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT3G11730

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6495

Class C:

plasma membrane

ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT2G43130

Predicted

Phylogenetic profile method

FSW = 0.8269

Class C:

plasma membrane

ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT3G53610

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8227

Class C:

plasma membrane

ATRAB8 GTP BINDING
AT3G09900

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4954

Class C:

plasma membrane

ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT1G09630

Predicted

Phylogenetic profile method

FSW = 0.7902

Class C:

plasma membrane

ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT3G07410

Predicted

Phylogenetic profile method

FSW = 0.8543

Class C:

plasma membrane

ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT1G28550

Predicted

Phylogenetic profile method

FSW = 0.7605

Class C:

plasma membrane

ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G59840

Predicted

Phylogenetic profile method

FSW = 0.5335

Class C:

plasma membrane

RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G18430

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6644

Class C:

plasma membrane

ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT4G39990

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8543

Class C:

plasma membrane

RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT3G46830

Predicted

Phylogenetic profile method

FSW = 0.8141

Class C:

plasma membrane

ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT1G06400

Predicted

Phylogenetic profile method

FSW = 0.6505

Class C:

plasma membrane

ARA-2 GTP BINDING
AT5G59150

Predicted

Phylogenetic profile method

FSW = 0.8704

Class C:

plasma membrane

ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT1G07410

Predicted

Phylogenetic profile method

FSW = 0.7918

Class C:

plasma membrane

ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G18800

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3757

Class C:

plasma membrane

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G65270

Predicted

Phylogenetic profile method

FSW = 0.8079

Class C:

plasma membrane

ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING
AT1G73640

Predicted

Phylogenetic profile method

FSW = 0.8568

Class C:

plasma membrane

ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT1G01200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8624

Class C:

nucleus

ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT4G35860

Predicted

Phylogenetic profile method

FSW = 0.8066

Unknown

ATGB2 (GTP-BINDING 2) GTP BINDING
AT2G22290

Predicted

Phylogenetic profile method

FSW = 0.2048

Unknown

ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT5G03520

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7225

Unknown

ATRAB8C GTP BINDING
AT3G54840

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1498

Unknown

ARA6 GTP BINDING / GTPASE
AT1G47500

Predicted

two hybrid

two hybrid

FSW = 0.0119

Unknown

ATRBP47C (RNA-BINDING PROTEIN 47C) RNA BINDING
AT5G55190

Predicted

two hybrid

FSW = 0.0127

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G17160

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8521

Unknown

ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING
AT5G03530

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9337

Unknown

RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT5G39620

Predicted

Phylogenetic profile method

FSW = 0.4098

Unknown

ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING
AT4G39890

Predicted

Phylogenetic profile method

FSW = 0.5373

Unknown

ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING
AT5G60860

Predicted

Phylogenetic profile method

FSW = 0.7766

Unknown

ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT3G15060

Predicted

Phylogenetic profile method

FSW = 0.7766

Unknown

ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT3G09910

Predicted

Phylogenetic profile method

FSW = 0.7640

Unknown

ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT2G31680

Predicted

Phylogenetic profile method

FSW = 0.7996

Unknown

ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT2G33870

Predicted

Phylogenetic profile method

FSW = 0.7766

Unknown

ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT5G47960

Predicted

Phylogenetic profile method

FSW = 0.7766

Unknown

ATRABA4C GTP BINDING
AT3G12160

Predicted

Phylogenetic profile method

FSW = 0.7956

Unknown

RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454