Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17615 - ( CBL1 (CALCINEURIN B-LIKE PROTEIN 1) calcium ion binding )
27 Proteins interacs with AT4G17615Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G64070 | Experimentaltwo hybrid | FSW = 0.1667
| Class A:plasma membraneClass B:unclearcytosol | PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) 1-PHOSPHATIDYLINOSITOL 4-KINASE |
AT4G24400 | Experimental | FSW = 0.0153
| Class A:plasma membraneClass D:cytosol (p = 0.67) | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G26570 | Experimental | FSW = 0.6679
| Class B:vacuoleplasma membraneClass D:extracellular (p = 0.86)cytosol (p = 0.67) | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING |
AT5G01820 | Experimentalcoimmunoprecipitation | FSW = 0.0667
| Class B:vacuoleplasma membraneClass D:cytosol (p = 0.67) | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G30270 | Experimentaltwo hybridtwo hybrid | FSW = 0.0769
| Class B:unclearplasma membrane | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT2G26980 | Experimentaltwo hybrid | FSW = 0.1683
| Class B:plasma membranenucleuscytosolClass D:cytosol (p = 0.67) | CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G17510 | Experimentaltwo hybridtwo hybridtwo hybridpull downpull downtwo hybridprotein complementation assay | FSW = 0.2353
| Unknown | CIPK1 (CBL-INTERACTING PROTEIN KINASE 1) KINASE/ PROTEIN BINDING |
AT5G10930 | Experimentaltwo hybrid | FSW = 0.1629
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G30960 | Experimentaltwo hybridtwo hybrid | FSW = 0.1925
| Unknown | SIP3 (SOS3-INTERACTING PROTEIN 3) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G07070 | Experimental | FSW = 0.0833
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G23000 | Experimental | FSW = 0.1176
| Unknown | CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G48260 | Experimental | FSW = 0.1818
| Unknown | CIPK17 (CBL-INTERACTING PROTEIN KINASE 17) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G29230 | Experimental | FSW = 0.0769
| Unknown | CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G35410 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0758
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT2G30360 | Experimental | FSW = 0.1377
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
AT4G18700 | Experimental | FSW = 0.2755
| Unknown | CIPK12 (CBL-INTERACTING PROTEIN KINASE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G25090 | Experimental | FSW = 0.1667
| Unknown | CIPK16 (CBL-INTERACTING PROTEIN KINASE 16) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G01140 | Experimentaltwo hybrid | FSW = 0.1443
| Unknown | CIPK9 (CBL-INTERACTING PROTEIN KINASE 9) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G18290 | Experimental | FSW = 0.0144
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT5G01810 | ExperimentalAffinity Capture-Westerntwo hybridtwo hybridReconstituted Complex | FSW = 0.1290
| Unknown | CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) KINASE/ PROTEIN KINASE |
AT4G14580 | Experimental | FSW = 0.1161
| Unknown | CIPK4 (CBL-INTERACTING PROTEIN KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G04190 | Experimentaltwo hybrid | FSW = 0.1935
| Unknown | PKS4 (PHYTOCHROME KINASE SUBSTRATE 4) |
AT5G47100 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3547
| Class C:plasma membrane | CBL9 CALCIUM ION BINDING |
AT4G37010 | PredictedGene fusion methodCo-expression | FSW = 0.0113
| Unknown | CALTRACTIN PUTATIVE / CENTRIN PUTATIVE |
AT5G40650 | Predictedtwo hybrid | FSW = 0.0333
| Unknown | SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
AT5G24270 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5105
| Unknown | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G30330 | Predictedtwo hybrid | FSW = 0.0893
| Unknown | GCN5L1 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454