Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17620 - ( glycine-rich protein )
60 Proteins interacs with AT4G17620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G33120 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | 60S RIBOSOMAL PROTEIN L9 (RPL90B) |
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.2532
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.1388
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT3G09200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1465
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0B) |
AT1G27400 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0976
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT2G31610 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3A) |
AT2G47610 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2634
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.2356
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G67430 | PredictedAffinity Capture-MS | FSW = 0.2766
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.2186
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.0164
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37270 | PredictedAffinity Capture-MS | FSW = 0.1783
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G27850 | PredictedAffinity Capture-MS | FSW = 0.1405
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT5G25250 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S BAND 7 PROTEIN (INTERPROIPR001107) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G252601) HAS 4072 BLAST HITS TO 3210 PROTEINS IN 656 SPECIES ARCHAE - 10 BACTERIA - 1411 METAZOA - 994 FUNGI - 195 PLANTS - 102 VIRUSES - 10 OTHER EUKARYOTES - 1350 (SOURCE NCBI BLINK) |
AT1G04270 | PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G66580 | PredictedAffinity Capture-MS | FSW = 0.2822
| Unknown | 60S RIBOSOMAL PROTEIN L10 (RPL10C) |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G60770 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | 40S RIBOSOMAL PROTEIN S13 (RPS13A) |
AT3G07110 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AA) |
AT3G19980 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0036
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20290 | PredictedAffinity Capture-Western | FSW = 0.1714
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8A) |
AT1G09590 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21A) |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.2169
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT3G09840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0309
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT2G04390 | PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT4G00100 | PredictedAffinity Capture-MS | FSW = 0.1984
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G37190 | PredictedAffinity Capture-MS | FSW = 0.3035
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12A) |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.2443
| Unknown | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT3G16780 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
AT3G53430 | PredictedAffinity Capture-MS | FSW = 0.1187
| Unknown | 60S RIBOSOMAL PROTEIN L12 (RPL12B) |
AT3G53870 | PredictedAffinity Capture-MS | FSW = 0.2071
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT5G04600 | PredictedAffinity Capture-MS | FSW = 0.1131
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.2085
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT4G17390 | PredictedAffinity Capture-MS | FSW = 0.2667
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0027
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0026
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G09500 | PredictedAffinity Capture-MS | FSW = 0.1692
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15C) |
AT5G03340 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0117
| Unknown | CELL DIVISION CYCLE PROTEIN 48 PUTATIVE / CDC48 PUTATIVE |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.2293
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G30800 | PredictedAffinity Capture-MS | FSW = 0.1127
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G57660 | PredictedAffinity Capture-MS | FSW = 0.1910
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT1G75660 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mappingbiochemicalAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction prediction | FSW = 0.0672
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.2180
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT3G24830 | PredictedAffinity Capture-MS | FSW = 0.1866
| Unknown | 60S RIBOSOMAL PROTEIN L13A (RPL13AB) |
AT1G04730 | PredictedPhenotypic Enhancement | FSW = 0.0038
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT3G46960 | PredictedSynthetic Lethality | FSW = 0.0641
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT5G63140 | PredictedSynthetic Lethality | FSW = 0.0164
| Unknown | ATPAP29 (ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 29) ACID PHOSPHATASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G65180 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0115
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT5G11010 | PredictedAffinity Capture-MS | FSW = 0.0448
| Unknown | PRE-MRNA CLEAVAGE COMPLEX-RELATED |
AT3G07750 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0340
| Unknown | 3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN |
AT3G61620 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0399
| Unknown | RRP41 3-5-EXORIBONUCLEASE/ RNA BINDING |
AT3G48960 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
AT1G29965 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0131
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT2G40010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0094
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT3G26990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0268
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454