Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G17640 - ( CKB2 protein kinase CK2 regulator )

15 Proteins interacs with AT4G17640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G46830

Experimental

two hybrid

FSW = 0.0556

Unknown

CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT1G02340

Experimental

two hybrid

FSW = 0.0523

Unknown

HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT3G26590

Predicted

biochemical

FSW = 0.0118

Unknown

MATE EFFLUX FAMILY PROTEIN
AT5G58640

Predicted

Affinity Capture-MS

FSW = 0.0364

Unknown

SELENOPROTEIN-RELATED
AT2G44680

Predicted

Gene fusion method

Co-expression

FSW = 0.0154

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT2G03870

Predicted

Affinity Capture-MS

FSW = 0.0166

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G10330Predicted

Affinity Capture-MS

FSW = 0.0153

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G18100

Predicted

Affinity Capture-MS

FSW = 0.0202

Unknown

E12A11 PHOSPHATIDYLETHANOLAMINE BINDING
AT3G13710

Predicted

two hybrid

FSW = 0.1481

Unknown

PRA1F4 (PRENYLATED RAB ACCEPTOR 1F4)
AT1G70290

Predicted

Affinity Capture-MS

FSW = 0.0133

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G28720

Predicted

Affinity Capture-MS

FSW = 0.0431

Unknown

HISTONE H2B PUTATIVE
AT4G14240

Predicted

biochemical

FSW = 0.0108

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT5G17860

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER
AT5G66640

Predicted

biochemical

FSW = 0.0199

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT4G21130

Predicted

two hybrid

FSW = 0.0426

Unknown

EMB2271 (EMBRYO DEFECTIVE 2271) NUCLEOTIDE BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454