Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18060 - ( clathrin binding )

9 Proteins interacs with AT4G18060
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G10290

Experimental

two hybrid

FSW = 0.1426

Unknown

ADL6 (DYNAMIN-LIKE PROTEIN 6) GTPASE
AT5G42080

Predicted

two hybrid

in vitro

in vitro

in vivo

in vitro

in vivo

two hybrid

FSW = 0.0702

Unknown

ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G09590

Predicted

two hybrid

FSW = 0.0121

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G31440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2616

Unknown

SH3 DOMAIN-CONTAINING PROTEIN 1 (SH3P1)
AT5G47030

Predicted

two hybrid

FSW = 0.1204

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL
AT1G69220

Predicted

in vitro

FSW = 0.0245

Unknown

SIK1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G07790

Predicted

two hybrid

FSW = 0.0683

Unknown

DGCR14-RELATED
AT4G28680

Predicted

two hybrid

FSW = 0.0529

Unknown

TYROSINE DECARBOXYLASE PUTATIVE
AT1G15130

Predicted

two hybrid

in vivo

Affinity Capture-MS

FSW = 0.0462

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454