Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18330 - ( eukaryotic translation initiation factor 2 subunit 3 putative / eIF2S3 putative / eIF-2-gamma putative )

8 Proteins interacs with AT4G18330
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G59990

Predicted

in vitro

in vivo

FSW = 0.1469

Unknown

MAP2B (METHIONINE AMINOPEPTIDASE 2B) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT5G37590Predicted

two hybrid

FSW = 0.0856

Unknown

BINDING
AT5G54940

Predicted

Affinity Capture-MS

FSW = 0.0214

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT1G04170

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0849

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT2G18720

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1170

Unknown

GTP BINDING / GTPASE/ SERINE-TYPE PEPTIDASE/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT1G53330

Predicted

Gene fusion method

FSW = 0.2735

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G02300

Predicted

Gene fusion method

FSW = 0.2735

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G26500

Predicted

Gene fusion method

FSW = 0.1262

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454