Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18360 - ( (S)-2-hydroxy-acid oxidase peroxisomal putative / glycolate oxidase putative / short chain alpha-hydroxy acid oxidase putative )

11 Proteins interacs with AT4G18360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G14420

Predicted

Phylogenetic profile method

FSW = 0.1508

Class C:

peroxisome

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G14415

Predicted

Phylogenetic profile method

FSW = 0.2500

Class C:

peroxisome

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G14130

Predicted

Phylogenetic profile method

FSW = 0.3263

Class C:

peroxisome

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G14150

Predicted

Phylogenetic profile method

FSW = 0.4045

Class C:

peroxisome

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT2G33210

Predicted

pull down

FSW = 0.0208

Unknown

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT2G33450

Predicted

pull down

FSW = 0.0324

Unknown

50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28)
ATCG00160Predicted

pull down

FSW = 0.0348

Unknown

CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

pull down

FSW = 0.0161

Unknown

CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00810Predicted

pull down

FSW = 0.0224

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT1G17530

Predicted

interaction prediction

FSW = 0.1910

Unknown

ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER
AT5G02050

Predicted

interaction prediction

FSW = 0.1026

Unknown

MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454