Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT4G18593 - ( dual specificity protein phosphatase-related )

16 Proteins interacs with AT4G18593
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Synthetic Lethality

FSW = 0.0401

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT3G09440

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0967

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT1G21640

Predicted

interologs mapping

FSW = 0.0590

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT5G62880

Predicted

Reconstituted Complex

FSW = 0.0489

Unknown

ARAC10 GTP BINDING
AT5G63680

Predicted

interologs mapping

FSW = 0.0300

Unknown

PYRUVATE KINASE PUTATIVE
AT3G47960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2094

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G48545

Predicted

interologs mapping

FSW = 0.1059

Unknown

HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN
AT5G07110

Predicted

two hybrid

FSW = 0.0495

Unknown

PRA1B6 (PRENYLATED RAB ACCEPTOR 1B6)
AT1G22550

Predicted

Affinity Capture-MS

FSW = 0.0857

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G35530Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1684

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G66590

Predicted

two hybrid

FSW = 0.0075

Unknown

COX19 FAMILY PROTEIN
AT2G27200

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

GTP-BINDING FAMILY PROTEIN
AT5G13150

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1899

Unknown

ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT5G14520

Predicted

two hybrid

interologs mapping

interaction prediction

FSW = 0.0082

Unknown

PESCADILLO-RELATED
AT5G45020

Predicted

interologs mapping

FSW = 0.0750

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK)
AT1G08410

Predicted

Affinity Capture-MS

FSW = 0.0581

Unknown

GTP-BINDING FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454