Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18593 - ( dual specificity protein phosphatase-related )
16 Proteins interacs with AT4G18593Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0401
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G09440 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0967
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3) |
AT1G21640 | Predictedinterologs mapping | FSW = 0.0590
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G62880 | PredictedReconstituted Complex | FSW = 0.0489
| Unknown | ARAC10 GTP BINDING |
AT5G63680 | Predictedinterologs mapping | FSW = 0.0300
| Unknown | PYRUVATE KINASE PUTATIVE |
AT3G47960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2094
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G48545 | Predictedinterologs mapping | FSW = 0.1059
| Unknown | HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN |
AT5G07110 | Predictedtwo hybrid | FSW = 0.0495
| Unknown | PRA1B6 (PRENYLATED RAB ACCEPTOR 1B6) |
AT1G22550 | PredictedAffinity Capture-MS | FSW = 0.0857
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G35530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1684
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0075
| Unknown | COX19 FAMILY PROTEIN |
AT2G27200 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT5G13150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1899
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G14520 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0082
| Unknown | PESCADILLO-RELATED |
AT5G45020 | Predictedinterologs mapping | FSW = 0.0750
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G198801) HAS 1632 BLAST HITS TO 1632 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 907 METAZOA - 22 FUNGI - 156 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 478 (SOURCE NCBI BLINK) |
AT1G08410 | PredictedAffinity Capture-MS | FSW = 0.0581
| Unknown | GTP-BINDING FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454