Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18710 - ( BIN2 (BRASSINOSTEROID-INSENSITIVE 2) glycogen synthase kinase 3/ kinase/ protein kinase )

23 Proteins interacs with AT4G18710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G19350

Experimental

pull down

biochemical

two hybrid

FSW = 0.0833

Class D:

nucleus (p = 0.78)

BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT1G75080

Experimental

biochemical

two hybrid

two hybrid

protein kinase assay

interaction detection method

two hybrid

biochemical

FSW = 0.1026

Class D:

nucleus (p = 0.78)

BZR1 (BRASSINAZOLE-RESISTANT 1) DNA BINDING / TRANSCRIPTION REGULATOR/ TRANSCRIPTION REPRESSOR
AT5G62000

Experimental

protein kinase assay

two hybrid

biochemical

in vitro

FSW = 0.1026

Class D:

nucleus (p = 0.78)

ARF2 (AUXIN RESPONSE FACTOR 2) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G09840

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4269

Class C:

plasma membrane

ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G06390

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6380

Class C:

plasma membrane

GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE
AT4G01370

Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2207

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT1G59580

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.2462

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT3G45640

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.5953

Unknown

ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT4G36450

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7314

Unknown

ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE
AT4G19110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1567

Unknown

PROTEIN KINASE PUTATIVE
AT1G57870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4952

Unknown

ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G30980

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6408

Unknown

ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G61160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4446

Unknown

SHAGGY-RELATED PROTEIN KINASE BETA / ASK-BETA (ASK2)
AT5G14640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8000

Unknown

SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G43790

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.2267

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT2G18170

Predicted

Phylogenetic profile method

FSW = 0.6244

Unknown

ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE
AT3G05840

Predicted

Phylogenetic profile method

FSW = 0.7996

Unknown

ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G26751

Predicted

Phylogenetic profile method

FSW = 0.5790

Unknown

ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G10210

Predicted

Phylogenetic profile method

FSW = 0.1662

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT2G46070

Predicted

Phylogenetic profile method

FSW = 0.2267

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT1G07880

Predicted

Phylogenetic profile method

FSW = 0.3507

Unknown

ATMPK13 MAP KINASE/ KINASE
AT3G59790

Predicted

Phylogenetic profile method

FSW = 0.3079

Unknown

ATMPK10 MAP KINASE/ KINASE
AT2G19330

Predicted

Gene fusion method

FSW = 0.0334

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454