Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G18710 - ( BIN2 (BRASSINOSTEROID-INSENSITIVE 2) glycogen synthase kinase 3/ kinase/ protein kinase )
23 Proteins interacs with AT4G18710Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G19350 | Experimentalpull downbiochemicaltwo hybrid | FSW = 0.0833
| Class D:nucleus (p = 0.78) | BES1 (BRI1-EMS-SUPPRESSOR 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT1G75080 | Experimentalbiochemicaltwo hybridtwo hybridprotein kinase assayinteraction detection methodtwo hybridbiochemical | FSW = 0.1026
| Class D:nucleus (p = 0.78) | BZR1 (BRASSINAZOLE-RESISTANT 1) DNA BINDING / TRANSCRIPTION REGULATOR/ TRANSCRIPTION REPRESSOR |
AT5G62000 | Experimentalprotein kinase assaytwo hybridbiochemicalin vitro | FSW = 0.1026
| Class D:nucleus (p = 0.78) | ARF2 (AUXIN RESPONSE FACTOR 2) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G09840 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4269
| Class C:plasma membrane | ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G06390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6380
| Class C:plasma membrane | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT4G01370 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2207
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G59580 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2462
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT3G45640 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.5953
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT4G36450 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.7314
| Unknown | ATMPK14 (MITOGEN-ACTIVATED PROTEIN KINASE 14) MAP KINASE/ KINASE |
AT4G19110 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1567
| Unknown | PROTEIN KINASE PUTATIVE |
AT1G57870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4952
| Unknown | ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G30980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6408
| Unknown | ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G61160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4446
| Unknown | SHAGGY-RELATED PROTEIN KINASE BETA / ASK-BETA (ASK2) |
AT5G14640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8000
| Unknown | SK13 (SHAGGY-LIKE KINASE 13) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G43790 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.2267
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT2G18170 | PredictedPhylogenetic profile method | FSW = 0.6244
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT3G05840 | PredictedPhylogenetic profile method | FSW = 0.7996
| Unknown | ATSK12 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26751 | PredictedPhylogenetic profile method | FSW = 0.5790
| Unknown | ATSK11 PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G10210 | PredictedPhylogenetic profile method | FSW = 0.1662
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT2G46070 | PredictedPhylogenetic profile method | FSW = 0.2267
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT1G07880 | PredictedPhylogenetic profile method | FSW = 0.3507
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT3G59790 | PredictedPhylogenetic profile method | FSW = 0.3079
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT2G19330 | PredictedGene fusion method | FSW = 0.0334
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454