Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G18880 - ( AT-HSFA4A DNA binding / transcription factor )
39 Proteins interacs with AT4G18880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G47210 | PredictedAffinity Capture-MS | FSW = 0.0234
| Class C:nucleus | NUCLEAR RNA-BINDING PROTEIN PUTATIVE |
AT3G48750 | PredictedSynthetic Lethality | FSW = 0.0097
| Class C:nucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT1G48650 | PredictedAffinity Capture-MS | FSW = 0.0762
| Class C:nucleus | HELICASE DOMAIN-CONTAINING PROTEIN |
AT2G34440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridColocalizationinterologs mapping | FSW = 0.0201
| Class C:nucleus | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT2G26150 | PredictedAffinity Capture-Westerninterologs mappingPhenotypic Enhancement | FSW = 0.0441
| Class C:nucleus | ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G66656 | PredictedAffinity Capture-MS | FSW = 0.0152
| Class C:nucleus | AGL91 TRANSCRIPTION FACTOR |
AT2G45960 | PredictedSynthetic Lethality | FSW = 0.0069
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT1G16030 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0277
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G09660 | Predictedsynthetic growth defect | FSW = 0.0072
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G16880 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | URIDYLYLTRANSFERASE-RELATED |
AT5G52640 | Predictedinterologs mappingPhenotypic Suppression | FSW = 0.0091
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G38290 | Predictedinterologs mapping | FSW = 0.0465
| Unknown | ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER |
AT1G32090 | PredictedAffinity Capture-MS | FSW = 0.0303
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G19690 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT2G37790 | PredictedAffinity Capture-MS | FSW = 0.0092
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G09590 | PredictedSynthetic Rescue | FSW = 0.0930
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G66590 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G07780 | PredictedPhenotypic Suppression | FSW = 0.0190
| Unknown | PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE |
AT1G62800 | PredictedAffinity Capture-MS | FSW = 0.0285
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT1G10280 | PredictedPhenotypic Suppression | FSW = 0.0127
| Unknown | UNKNOWN PROTEIN |
AT1G23460 | PredictedAffinity Capture-MS | FSW = 0.0067
| Unknown | POLYGALACTURONASE |
AT1G66740 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | SGA2 |
AT1G67300 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
AT2G25100 | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | RIBONUCLEASE HII FAMILY PROTEIN |
AT3G11530 | Predictedtwo hybridAffinity Capture-MStwo hybridReconstituted ComplexSynthetic Rescue | FSW = 0.0698
| Unknown | VACUOLAR PROTEIN SORTING 55 FAMILY PROTEIN / VPS55 FAMILY PROTEIN |
AT3G45190 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
AT3G60245 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AC) |
AT1G10210 | Predictedtwo hybrid | FSW = 0.0027
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G54560 | Predictedbiochemical | FSW = 0.0049
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT2G44530 | Predictedinterologs mapping | FSW = 0.0152
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE PUTATIVE / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE PUTATIVE |
AT5G57950 | PredictedAffinity Capture-MS | FSW = 0.0173
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G30000 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | DIHYDROPTERIN PYROPHOSPHOKINASE PUTATIVE / DIHYDROPTEROATE SYNTHASE PUTATIVE / DHPS PUTATIVE |
AT5G01320 | PredictedSynthetic Lethality | FSW = 0.0766
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G25520 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | TRANSCRIPTION ELONGATION FACTOR-RELATED |
AT1G07270 | PredictedAffinity Capture-MS | FSW = 0.0337
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT3G01090 | Predictedbiochemicaltwo hybrid | FSW = 0.0122
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT1G13460 | Predictedinterologs mapping | FSW = 0.0794
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G12270 | Predictedsynthetic growth defect | FSW = 0.0617
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT1G11660 | Predictedsynthetic growth defect | FSW = 0.0494
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454