Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18910 - ( NIP12 (NOD26-LIKE INTRINSIC PROTEIN 12) arsenite transmembrane transporter/ water channel )

13 Proteins interacs with AT4G18910
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26520

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6154

Class C:

plasma membrane

TIP2 (TONOPLAST INTRINSIC PROTEIN 2) WATER CHANNEL
AT2G45960

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3408

Class C:

plasma membrane

PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL
AT1G01620

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4521

Class C:

plasma membrane

PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C) WATER CHANNEL
AT3G61430

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2284

Class C:

plasma membrane

PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL
AT4G00430

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6330

Class C:

plasma membrane

PIP14 (PLASMA MEMBRANE INTRINSIC PROTEIN 14) WATER CHANNEL
AT2G25810

Predicted

Phylogenetic profile method

FSW = 0.5867

Unknown

TIP41 (TONOPLAST INTRINSIC PROTEIN 41) WATER CHANNEL
AT2G36830

Predicted

Phylogenetic profile method

FSW = 0.5867

Unknown

GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT3G05630

Predicted

in vitro

in vivo

FSW = 0.0455

Unknown

PLDP2 PHOSPHOLIPASE D
AT1G17810

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2547

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT5G37820

Predicted

Phylogenetic profile method

FSW = 0.6403

Unknown

NIP42 (NOD26-LIKE INTRINSIC PROTEIN 42) WATER CHANNEL
AT3G47440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6154

Unknown

TIP51 (TONOPLAST INTRINSIC PROTEIN 51) UREA TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT4G19030

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8862

Unknown

NLM1 ARSENITE TRANSMEMBRANE TRANSPORTER/ WATER CHANNEL
AT1G65350

Predicted

Gene fusion method

FSW = 0.0625

Unknown

UBQ13 PROTEIN BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454