Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G18960 - ( AG (AGAMOUS) DNA binding / transcription factor )

30 Proteins interacs with AT4G18960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G24540

Experimental

two hybrid

FSW = 0.4519

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G69120

Experimental

Reconstituted Complex

FSW = 0.5219

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT2G32950

Experimental

FSW = 0.0097

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G12145

Experimental

in vitro

Co-purification

Reconstituted Complex

two hybrid

FSW = 0.1212

Class A:

nucleus

Class B:

cytosol

 FLR1 ENZYME INHIBITOR/ TRANSCRIPTION FACTOR BINDING
AT3G18650

Experimental

FSW = 0.1545

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AGL103 (AGAMOUS-LIKE 103) TRANSCRIPTION FACTOR
AT3G57230

Experimental

two hybrid

FSW = 0.4268

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 AGL16 (AGAMOUS-LIKE 16) TRANSCRIPTION FACTOR
AT4G09960

Experimental

FSW = 0.6008

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 STK (SEEDSTICK) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G23260

Experimental

3 hybrid method

FSW = 0.4356

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT1G24260

Experimental

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.4390

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G38620

Experimental

FSW = 0.1563

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 MADS-BOX PROTEIN (AGL73)
AT5G44200

Experimental

FSW = 0.0103

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT3G02310

Experimental

two hybrid

two hybrid

Reconstituted Complex

two hybrid

FSW = 0.3508

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SEP2 (SEPALLATA 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G15800

Experimental

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.4801

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 SEP1 (SEPALLATA1) DNA BINDING / TRANSCRIPTION FACTOR
AT1G09530

Experimental

FSW = 0.0202

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT5G20240

Experimental

Reconstituted Complex

FSW = 0.2515

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 PI (PISTILLATA) DNA BINDING / TRANSCRIPTION FACTOR
AT1G48150

Experimental

two hybrid

FSW = 0.2217

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 MADS-BOX PROTEIN (AGL74 )
AT4G37940

Experimental

two hybrid

FSW = 0.3630

Class A:

nucleus

 AGL21 TRANSCRIPTION FACTOR
AT5G24780

Experimental

Co-purification

FSW = 0.0099

Class B:

vacuole

nucleus

 VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT5G13790

Experimental

two hybrid

FSW = 0.3364

Class B:

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

 AGL15 (AGAMOUS-LIKE 15) DNA BINDING / TRANSCRIPTION FACTOR
AT1G13980

Experimental

FSW = 0.0242

Class B:

nucleus

endoplasmic reticulum

Class D:

nucleus (p = 0.78)

 GN (GNOM) GTPGDP ANTIPORTER/ PROTEIN HOMODIMERIZATION
AT3G54340

Experimental

Reconstituted Complex

FSW = 0.2338

Class D:

nucleus (p = 0.78)

 AP3 (APETALA 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G03730

Experimental

FSW = 0.0056

Class D:

nucleus (p = 0.78)

 CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT3G61120

Experimental

two hybrid

FSW = 0.3439

Class D:

nucleus (p = 0.78)

 AGL13 (AGAMOUS-LIKE 13) DNA BINDING / TRANSCRIPTION FACTOR
AT4G11880

Experimental

FSW = 0.3974

Class D:

nucleus (p = 0.78)

 AGL14 (AGAMOUS-LIKE 14) DNA BINDING / TRANSCRIPTION FACTOR
AT5G60910

Experimental

two hybrid

FSW = 0.3522

Class D:

nucleus (p = 0.78)

 AGL8 (AGAMOUS-LIKE 8) TRANSCRIPTION FACTOR
AT3G58780

Experimental

FSW = 0.5352

Class D:

nucleus (p = 0.78)

 SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G45650

Experimental

two hybrid

Reconstituted Complex

FSW = 0.5504

Class D:

nucleus (p = 0.78)

 AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT5G27130

Experimental

two hybrid

FSW = 0.2048

Unknown

 AGL39 (AGAMOUS LIKE 39) DNA BINDING / TRANSCRIPTION FACTOR
AT1G46408

Experimental

two hybrid

FSW = 0.1297

Unknown

 AGL97 (AGAMOUS-LIKE 97) DNA BINDING / TRANSCRIPTION FACTOR
AT1G77950

Predicted

Gene fusion method

Co-expression

FSW = 0.1029

Class C:

nucleus

 AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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