Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19006 - ( 26S proteasome regulatory subunit putative (RPN9) )
53 Proteins interacs with AT4G19006Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G51260 | PredictedAffinity Capture-MS | FSW = 0.3396
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.3101
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MS | FSW = 0.2211
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G04910 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G58030 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | CAT2 (CATIONIC AMINO ACID TRANSPORTER 2) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT2G01690 | Predictedtwo hybridinteraction prediction | FSW = 0.0045
| Unknown | BINDING |
AT5G35590 | PredictedAffinity Capture-MS | FSW = 0.1711
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3106
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710 | PredictedSynthetic Rescue | FSW = 0.0212
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT2G45300 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0530
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT1G48860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0300
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G45000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4795
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4500
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4395
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT1G04810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5625
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3823
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G47250 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2147
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53750 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4535
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3771
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G20140 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5217
| Unknown | 26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3714
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5961
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G09100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5281
| Unknown | RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B) ATPASE/ CALMODULIN BINDING |
AT3G05530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5333
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT3G13445 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0180
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G37990 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | RIBOSOME BIOGENESIS REGULATORY PROTEIN (RRS1) FAMILY PROTEIN |
AT1G55520 | PredictedAffinity Capture-MS | FSW = 0.0353
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT4G34270 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | TIP41-LIKE FAMILY PROTEIN |
AT1G16190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.2923
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0714
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT5G58290 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5051
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G38470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1782
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G29150 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3750
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5067
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT5G05780 | PredictedAffinity Capture-MS | FSW = 0.2314
| Unknown | RPN8A (RP NON-ATPASE SUBUNIT 8A) |
AT5G23540 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5795
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G43010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5032
| Unknown | RPT4A ATPASE |
AT5G64760 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3076
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G54290 | Predictedtwo hybridinteraction prediction | FSW = 0.0264
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G03430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5121
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G32730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4780
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT3G11270 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5857
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G54380 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT1G10520 | PredictedAffinity Capture-MS | FSW = 0.3009
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT2G17190 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.1818
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT4G29040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5312
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2703
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5842
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G44635 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0194
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT1G64750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4500
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
AT2G23420 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
AT5G45620 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.1244
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454