Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19560 - ( CYCT12 cyclin-dependent protein kinase )
49 Proteins interacs with AT4G19560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Enhancement | FSW = 0.1048
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT3G22890 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1907
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT3G09820 | Predictedtwo hybrid | FSW = 0.0362
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.1277
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G64190 | PredictedPhenotypic Enhancement | FSW = 0.0498
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.1046
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G51820 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1624
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G10070 | Predictedbiochemical | FSW = 0.0466
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.3269
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.1289
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G25800 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G04750 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1901
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT3G25540 | PredictedAffinity Capture-MS | FSW = 0.1338
| Unknown | LAG1 |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.2037
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0531
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G28460 | PredictedPhenotypic Enhancement | FSW = 0.1939
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1444
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G60980 | PredictedPhenotypic Enhancement | FSW = 0.0845
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.2635
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G02730 | PredictedPhenotypic Suppression | FSW = 0.1073
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedPhenotypic Enhancement | FSW = 0.0894
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.2792
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1184
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G52500 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1959
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.1612
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G15910 | PredictedPhenotypic Enhancement | FSW = 0.3056
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G31260 | PredictedPhenotypic Suppression | FSW = 0.2300
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G33560 | PredictedAffinity Capture-MS | FSW = 0.0177
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.2341
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.1775
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G12200 | PredictedPhenotypic Suppression | FSW = 0.1534
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18850 | PredictedPhenotypic Suppression | FSW = 0.1495
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G50780 | PredictedPhenotypic Enhancement | FSW = 0.2157
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT4G00800 | PredictedPhenotypic Suppression | FSW = 0.1892
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G10210 | Predictedbiochemical | FSW = 0.0374
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.2300
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G26320 | PredictedPhenotypic Enhancement | FSW = 0.1487
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.0963
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.1996
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G38250 | PredictedPhenotypic Enhancement | FSW = 0.1822
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G01430 | PredictedAffinity Capture-MS | FSW = 0.2286
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G04800 | PredictedPhenotypic Enhancement | FSW = 0.0733
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.2716
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G42720 | Predictedsynthetic growth defect | FSW = 0.4444
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G65980 | PredictedAffinity Capture-MS | FSW = 0.0829
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT5G13860 | PredictedPhenotypic Enhancement | FSW = 0.1505
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.1021
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G45190 | PredictedPhylogenetic profile method | FSW = 0.0111
| Unknown | CYCLIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454