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AT4G19640 - ( ARA7 GTP binding )

82 Proteins interacs with AT4G19640

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G33000	Experimental confocal microscopy	FSW = 0.0243	Unknown	CBL10 (CALCINEURIN B-LIKE 10) CALCIUM ION BINDING
AT2G27600	Experimental confocal microscopy electron microscopy	FSW = 0.0237	Unknown	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G09630	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0137	Class C: vacuole plasma membrane	60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G45750	Predicted Phylogenetic profile method Co-expression	FSW = 0.2139	Class C: vacuole plasma membrane	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G49300	Predicted Phylogenetic profile method	FSW = 0.2526	Class C: vacuole plasma membrane	RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING
AT2G44610	Predicted Phylogenetic profile method Co-expression	FSW = 0.2451	Class C: vacuole plasma membrane	RAB6A GTP BINDING / PROTEIN BINDING
AT3G46060	Predicted Phylogenetic profile method	FSW = 0.2319	Class C: vacuole plasma membrane	ATRAB8A GTP BINDING
AT4G17170	Predicted Phylogenetic profile method	FSW = 0.2139	Class C: vacuole plasma membrane	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT2G43160	Predicted interologs mapping interologs mapping	FSW = 0.0135	Class C: vacuole plasma membrane	EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT1G31780	Predicted interologs mapping	FSW = 0.0741	Class C: vacuole golgi	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT5G45130	Predicted Phylogenetic profile method Co-expression	FSW = 0.4065	Class C: vacuole endoplasmic reticulum	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G16480	Predicted interologs mapping	FSW = 0.0070	Class C: vacuole	MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT5G41790	Predicted in vitro	FSW = 0.0203	Class C: vacuole	CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING
AT1G22740	Predicted Phylogenetic profile method	FSW = 0.3023	Class C: vacuole	RABG3B GTP BINDING
AT2G30710	Predicted biochemical	FSW = 0.1360	Class C: vacuole	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G22110	Predicted interologs mapping	FSW = 0.0221	Class C: vacuole	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G38020	Predicted Phenotypic Enhancement	FSW = 0.1174	Class C: vacuole	VCL1 (VACUOLELESS 1)
AT3G62870	Predicted synthetic growth defect	FSW = 0.0069	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G21880	Predicted Phylogenetic profile method	FSW = 0.2890	Class C: vacuole	ATRAB7A GTP BINDING
AT5G23630	Predicted interologs mapping	FSW = 0.0715	Class C: plasma membrane endoplasmic reticulum	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT3G22890	Predicted synthetic growth defect	FSW = 0.0034	Class C: plasma membrane	APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT3G08530	Predicted synthetic growth defect	FSW = 0.0089	Class C: plasma membrane	CLATHRIN HEAVY CHAIN PUTATIVE
AT3G16100	Predicted Phylogenetic profile method	FSW = 0.2774	Class C: plasma membrane	ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING
AT3G18820	Predicted Phylogenetic profile method	FSW = 0.2964	Class C: plasma membrane	ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING
AT3G47370	Predicted Synthetic Lethality	FSW = 0.0023	Class C: plasma membrane	40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT2G36380	Predicted Affinity Capture-MS	FSW = 0.0223	Class C: plasma membrane	PDR6 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G23900	Predicted synthetic growth defect	FSW = 0.0093	Class C: plasma membrane	60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT3G53610	Predicted Phylogenetic profile method	FSW = 0.2458	Class C: plasma membrane	ATRAB8 GTP BINDING
AT3G09900	Predicted Phylogenetic profile method	FSW = 0.2058	Class C: plasma membrane	ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT4G04720	Predicted interologs mapping	FSW = 0.0082	Class C: plasma membrane	CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G43130	Predicted Phylogenetic profile method	FSW = 0.2910	Class C: plasma membrane	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT5G59840	Predicted Phylogenetic profile method	FSW = 0.1993	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT5G59150	Predicted Phylogenetic profile method	FSW = 0.1640	Class C: plasma membrane	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT3G46830	Predicted Phylogenetic profile method	FSW = 0.1408	Class C: plasma membrane	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT5G03520	Predicted Phylogenetic profile method	FSW = 0.3076	Class C: golgi	ATRAB8C GTP BINDING
AT1G04260	Predicted two hybrid	FSW = 0.1136	Class C: golgi	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING
AT3G54840	Predicted Phylogenetic profile method Co-expression	FSW = 0.1609	Class C: endosome endoplasmic reticulum	ARA6 GTP BINDING / GTPASE
AT1G10130	Predicted interologs mapping	FSW = 0.0594	Class C: endosome endoplasmic reticulum	ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G10730	Predicted Affinity Capture-MS	FSW = 0.0125	Class C: endoplasmic reticulum	SAD1/UNC-84-LIKE 2 FAMILY PROTEIN
AT4G28390	Predicted synthetic growth defect interologs mapping	FSW = 0.0223	Unknown	AAC3 (ADP/ATP CARRIER 3) ATPADP ANTIPORTER/ BINDING
AT2G06850	Predicted two hybrid	FSW = 0.0233	Unknown	EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT2G40400	Predicted two hybrid	FSW = 0.0110	Unknown	UNKNOWN PROTEIN
AT4G00520	Predicted two hybrid	FSW = 0.0171	Unknown	ACYL-COA THIOESTERASE FAMILY PROTEIN
AT1G01200	Predicted Phylogenetic profile method	FSW = 0.2070	Unknown	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT1G55750	Predicted two hybrid	FSW = 0.0351	Unknown	TRANSCRIPTION FACTOR-RELATED
AT2G22290	Predicted Synthetic Lethality Phylogenetic profile method Co-expression	FSW = 0.2617	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT5G64990	Predicted Phylogenetic profile method Co-expression	FSW = 0.2671	Unknown	ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT2G04750	Predicted Synthetic Lethality	FSW = 0.0057	Unknown	FIMBRIN-LIKE PROTEIN PUTATIVE
AT3G06540	Predicted Affinity Capture-MS Affinity Capture-MS Enriched domain pair Co-expression	FSW = 0.1172	Unknown	GDP DISSOCIATION INHIBITOR FAMILY PROTEIN / RAB GTPASE ACTIVATOR FAMILY PROTEIN
AT1G77140	Predicted Phenotypic Enhancement	FSW = 0.0360	Unknown	VPS45 (VACUOLAR PROTEIN SORTING 45) PROTEIN TRANSPORTER
AT2G05170	Predicted Phenotypic Enhancement	FSW = 0.0406	Unknown	ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT4G22720	Predicted Affinity Capture-MS	FSW = 0.0248	Unknown	GLYCOPROTEASE M22 FAMILY PROTEIN
AT5G07110	Predicted in vitro two hybrid	FSW = 0.0770	Unknown	PRA1B6 (PRENYLATED RAB ACCEPTOR 1B6)
AT2G03667	Predicted synthetic growth defect	FSW = 0.0060	Unknown	ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT2G39640	Predicted synthetic growth defect	FSW = 0.0419	Unknown	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT2G46710	Predicted Reconstituted Complex two hybrid Affinity Capture-MS Affinity Capture-Western	FSW = 0.0179	Unknown	RAC GTPASE ACTIVATING PROTEIN PUTATIVE
AT1G06790	Predicted two hybrid	FSW = 0.0156	Unknown	RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G21730	Predicted Affinity Capture-Western Reconstituted Complex	FSW = 0.0494	Unknown	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT5G19360	Predicted Affinity Capture-MS	FSW = 0.0157	Unknown	CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G25520	Predicted Synthetic Rescue	FSW = 0.0182	Unknown	TRANSCRIPTION ELONGATION FACTOR-RELATED
AT5G45190	Predicted interologs mapping	FSW = 0.0069	Unknown	CYCLIN FAMILY PROTEIN
AT2G44100	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid Enriched domain pair Co-expression	FSW = 0.0781	Unknown	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR
AT1G16980	Predicted Affinity Capture-MS	FSW = 0.0054	Unknown	ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G19770	Predicted Affinity Capture-Western biochemical two hybrid	FSW = 0.0299	Unknown	VPS9A RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G27970	Predicted interologs mapping Synthetic Lethality	FSW = 0.0821	Unknown	BINDING
AT1G52360	Predicted interologs mapping	FSW = 0.0094	Unknown	COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE
AT1G57600	Predicted interologs mapping	FSW = 0.0819	Unknown	MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN
AT1G14290	Predicted interologs mapping	FSW = 0.0367	Unknown	SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT3G04080	Predicted interologs mapping	FSW = 0.0978	Unknown	ATAPY1 (APYRASE 1) ATPASE/ CALMODULIN BINDING / NUCLEOTIDE DIPHOSPHATASE
AT1G20575	Predicted interologs mapping	FSW = 0.0544	Unknown	DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE
AT1G09460	Predicted interologs mapping	FSW = 0.0879	Unknown	GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT1G70790	Predicted interologs mapping	FSW = 0.0490	Unknown	C2 DOMAIN-CONTAINING PROTEIN
AT1G08770	Predicted in vitro two hybrid	FSW = 0.0736	Unknown	PRA1E (PRENYLATED RAB ACCEPTOR 1E)
AT1G12470	Predicted Phenotypic Enhancement	FSW = 0.0734	Unknown	PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT3G22590	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0178	Unknown	RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT1G08190	Predicted Synthetic Lethality	FSW = 0.1195	Unknown	VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41)
AT2G36300	Predicted Synthetic Lethality Synthetic Lethality two hybrid	FSW = 0.0978	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT1G30890	Predicted two hybrid	FSW = 0.1146	Unknown	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT4G17160	Predicted Phylogenetic profile method	FSW = 0.2390	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING
AT4G39890	Predicted Phylogenetic profile method	FSW = 0.2789	Unknown	ATRABH1C (ARABIDOPSIS RAB GTPASE HOMOLOG H1C) GTP BINDING / PROTEIN BINDING
AT5G10260	Predicted Phylogenetic profile method	FSW = 0.1002	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT2G31680	Predicted Phylogenetic profile method	FSW = 0.2634	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT4G19640 - ( ARA7 GTP binding )

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