Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT4G19645 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN integral to membrane CONTAINS InterPro DOMAIN/s TRAM LAG1 and CLN8 homology (InterProIPR006634) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G313002) Has 401 Blast hits to 401 proteins in 98 species Archae - 0 Bacteria - 0 Metazoa - 186 Fungi - 102 Plants - 84 Viruses - 0 Other Eukaryotes - 29 (source NCBI BLink) )

81 Proteins interacs with AT4G19645
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G09630

Predicted

Phenotypic Suppression

FSW = 0.0436

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.1256

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT2G20450

Predicted

Affinity Capture-MS

FSW = 0.1051

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14A)
AT4G21980

Predicted

Phenotypic Suppression

FSW = 0.0701

Unknown

APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT5G24780

Predicted

Affinity Capture-MS

FSW = 0.3801

Unknown

VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING
AT5G07090

Predicted

Phenotypic Enhancement

FSW = 0.1046

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT2G29990

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3900

Unknown

NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.1425

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G44310

Predicted

Phenotypic Enhancement

FSW = 0.0202

Unknown

NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT3G48170

Predicted

Phenotypic Suppression

FSW = 0.0282

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT4G26970

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3703

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT5G15450

Predicted

Phenotypic Enhancement

FSW = 0.0637

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G23430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3549

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G75840

Predicted

Affinity Capture-MS

FSW = 0.3262

Unknown

ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT1G27970

Predicted

Affinity Capture-MS

FSW = 0.2382

Unknown

NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER
AT2G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3978

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G62300

Predicted

Affinity Capture-MS

FSW = 0.1966

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20C)
AT5G12480

Predicted

Affinity Capture-MS

FSW = 0.0074

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT4G22120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3967

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.0986

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G53870

Predicted

biochemical

FSW = 0.0157

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3B)
AT4G18800

Predicted

Phenotypic Suppression

FSW = 0.0583

Unknown

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G59950

Predicted

Affinity Capture-Western

FSW = 0.1112

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT3G52250

Predicted

Phenotypic Enhancement

FSW = 0.1100

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT1G28460

Predicted

Phenotypic Suppression

FSW = 0.0488

Unknown

AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT2G30160

Predicted

Phenotypic Enhancement

FSW = 0.1527

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G10920

Predicted

Affinity Capture-MS

FSW = 0.3079

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.1474

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT3G18480

Predicted

Phenotypic Enhancement

FSW = 0.1148

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT5G02730

Predicted

Phenotypic Enhancement

FSW = 0.0299

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G57625

Predicted

Affinity Capture-MS

FSW = 0.4002

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3444

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G38960

Predicted

biochemical

FSW = 0.0184

Unknown

AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT3G16050

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2735

Unknown

A37 PROTEIN HETERODIMERIZATION
AT4G39200

Predicted

Phenotypic Enhancement

FSW = 0.1333

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G62800

Predicted

Phenotypic Enhancement

FSW = 0.0620

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT2G29540

Predicted

Phenotypic Enhancement

FSW = 0.1112

Unknown

ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G17190

Predicted

Phenotypic Enhancement

FSW = 0.1195

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G24706

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2430

Unknown

UNKNOWN PROTEIN
AT1G52500

Predicted

Phenotypic Suppression

FSW = 0.0822

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G58520

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4983

Unknown

HYDROLASE ACTING ON ESTER BONDS / LIPASE
AT2G01770

Predicted

Affinity Capture-MS

FSW = 0.4380

Unknown

VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER
AT2G19910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3596

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT2G43360

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3820

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT2G46860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2601

Unknown

ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT3G06483

Predicted

Phenotypic Suppression

FSW = 0.0998

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT3G18850

Predicted

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.3725

Unknown

LPAT5 ACYLTRANSFERASE
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.1352

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G49880

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3761

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G53730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4145

Unknown

HISTONE H4
AT3G59410

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2947

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G00800Predicted

Phenotypic Enhancement

FSW = 0.1824

Unknown

BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G10360

Predicted

Phenotypic Suppression

Gene neighbors method

Phylogenetic profile method

FSW = 0.0758

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT4G17380

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2860

Unknown

MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT1G11510

Predicted

synthetic growth defect

FSW = 0.0440

Unknown

DNA-BINDING STOREKEEPER PROTEIN-RELATED
AT1G21370

Predicted

Phenotypic Suppression

FSW = 0.0705

Unknown

UNKNOWN PROTEIN
AT1G29970

Predicted

Phenotypic Suppression

FSW = 0.0851

Unknown

RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)
AT1G31170

Predicted

Phenotypic Suppression

FSW = 0.0933

Unknown

SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G34580

Predicted

Phenotypic Enhancement

FSW = 0.1114

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G78770

Predicted

Phenotypic Suppression

FSW = 0.0861

Unknown

CELL DIVISION CYCLE FAMILY PROTEIN
AT2G24960

Predicted

Phenotypic Enhancement

FSW = 0.0928

Unknown

UNKNOWN PROTEIN
AT2G34750

Predicted

Phenotypic Enhancement

FSW = 0.0809

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G37760

Predicted

Affinity Capture-MS

FSW = 0.2014

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.3237

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT2G48100

Predicted

Phenotypic Suppression

FSW = 0.0859

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G09640

Predicted

Phenotypic Suppression

FSW = 0.0721

Unknown

APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G25900

Predicted

Phenotypic Enhancement

FSW = 0.0939

Unknown

HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE
AT3G51880

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.4188

Unknown

HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT3G59540Predicted

Phenotypic Suppression

FSW = 0.1051

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G14240

Predicted

biochemical

FSW = 0.0190

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK)
AT4G35620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3760

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G04800

Predicted

Phenotypic Suppression

FSW = 0.0566

Unknown

40S RIBOSOMAL PROTEIN S17 (RPS17D)
AT5G06150

Predicted

Synthetic Rescue

FSW = 0.0345

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G14060

Predicted

Synthetic Lethality

FSW = 0.1359

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G27640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3866

Unknown

TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT5G54940

Predicted

Phenotypic Suppression

FSW = 0.0384

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT5G67540

Predicted

Phenotypic Enhancement

FSW = 0.1075

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT5G19150

Predicted

Affinity Capture-MS

FSW = 0.3043

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G19820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1965

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G20060

Predicted

Affinity Capture-MS

FSW = 0.3294

Unknown

PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.1867

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454