Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19645 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN integral to membrane CONTAINS InterPro DOMAIN/s TRAM LAG1 and CLN8 homology (InterProIPR006634) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G313002) Has 401 Blast hits to 401 proteins in 98 species Archae - 0 Bacteria - 0 Metazoa - 186 Fungi - 102 Plants - 84 Viruses - 0 Other Eukaryotes - 29 (source NCBI BLink) )
81 Proteins interacs with AT4G19645Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Suppression | FSW = 0.0436
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.1256
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1051
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0701
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.3801
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT5G07090 | PredictedPhenotypic Enhancement | FSW = 0.1046
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4B) |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3900
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.1425
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G44310 | PredictedPhenotypic Enhancement | FSW = 0.0202
| Unknown | NIT1 INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT3G48170 | PredictedPhenotypic Suppression | FSW = 0.0282
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3703
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G15450 | PredictedPhenotypic Enhancement | FSW = 0.0637
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3549
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.3262
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.2382
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3978
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.1966
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G12480 | PredictedAffinity Capture-MS | FSW = 0.0074
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3967
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0986
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G53870 | Predictedbiochemical | FSW = 0.0157
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT4G18800 | PredictedPhenotypic Suppression | FSW = 0.0583
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT5G59950 | PredictedAffinity Capture-Western | FSW = 0.1112
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G52250 | PredictedPhenotypic Enhancement | FSW = 0.1100
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT1G28460 | PredictedPhenotypic Suppression | FSW = 0.0488
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G30160 | PredictedPhenotypic Enhancement | FSW = 0.1527
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.3079
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.1474
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT3G18480 | PredictedPhenotypic Enhancement | FSW = 0.1148
| Unknown | ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT) |
AT5G02730 | PredictedPhenotypic Enhancement | FSW = 0.0299
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.4002
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3444
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G38960 | Predictedbiochemical | FSW = 0.0184
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2735
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1333
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.0620
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT2G29540 | PredictedPhenotypic Enhancement | FSW = 0.1112
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.1195
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2430
| Unknown | UNKNOWN PROTEIN |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.0822
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G58520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4983
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.4380
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3596
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3820
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2601
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G06483 | PredictedPhenotypic Suppression | FSW = 0.0998
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G18850 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.3725
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.1352
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3761
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4145
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2947
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G00800 | PredictedPhenotypic Enhancement | FSW = 0.1824
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G10360 | PredictedPhenotypic SuppressionGene neighbors methodPhylogenetic profile method | FSW = 0.0758
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 453 BLAST HITS TO 451 PROTEINS IN 101 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 225 FUNGI - 97 PLANTS - 91 VIRUSES - 3 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT4G17380 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2860
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.0440
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G21370 | PredictedPhenotypic Suppression | FSW = 0.0705
| Unknown | UNKNOWN PROTEIN |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0851
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G31170 | PredictedPhenotypic Suppression | FSW = 0.0933
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34580 | PredictedPhenotypic Enhancement | FSW = 0.1114
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G78770 | PredictedPhenotypic Suppression | FSW = 0.0861
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0928
| Unknown | UNKNOWN PROTEIN |
AT2G34750 | PredictedPhenotypic Enhancement | FSW = 0.0809
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.2014
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.3237
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G48100 | PredictedPhenotypic Suppression | FSW = 0.0859
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G09640 | PredictedPhenotypic Suppression | FSW = 0.0721
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G25900 | PredictedPhenotypic Enhancement | FSW = 0.0939
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G51880 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.4188
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59540 | PredictedPhenotypic Suppression | FSW = 0.1051
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G14240 | Predictedbiochemical | FSW = 0.0190
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3760
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G04800 | PredictedPhenotypic Suppression | FSW = 0.0566
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G06150 | PredictedSynthetic Rescue | FSW = 0.0345
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G14060 | PredictedSynthetic Lethality | FSW = 0.1359
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3866
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G54940 | PredictedPhenotypic Suppression | FSW = 0.0384
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G67540 | PredictedPhenotypic Enhancement | FSW = 0.1075
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT5G19150 | PredictedAffinity Capture-MS | FSW = 0.3043
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1965
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.3294
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.1867
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454