Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19690 - ( IRT1 (iron-regulated transporter 1) cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter )
45 Proteins interacs with AT4G19690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27090 | PredictedSynthetic Rescue | FSW = 0.0503
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT1G79550 | Predictedco-fractionationCo-fractionation | FSW = 0.2356
| Class C:plasma membrane | PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE |
AT4G36130 | Predictedco-fractionationCo-fractionation | FSW = 0.0456
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT3G58730 | Predictedco-fractionationCo-fractionation | FSW = 0.0456
| Class C:plasma membrane | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT3G05560 | Predictedco-fractionationCo-fractionation | FSW = 0.1155
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L22-2 (RPL22B) |
AT5G58800 | Predictedco-fractionationCo-fractionation | FSW = 0.1403
| Class C:plasma membrane | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0431
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G19860 | Predictedco-fractionationCo-fractionation | FSW = 0.0658
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G14420 | PredictedCo-purificationbiochemical | FSW = 0.1370
| Unknown | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT3G03920 | Predictedco-fractionationCo-fractionation | FSW = 0.0311
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT3G20550 | PredictedCo-purificationPhenotypic Enhancementinterologs mapping | FSW = 0.4036
| Unknown | DDL (DAWDLE) |
AT3G62030 | Predictedinterologs mappingco-fractionationCo-fractionation | FSW = 0.1354
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4) |
AT2G39290 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0356
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT2G03870 | Predictedinterologs mapping | FSW = 0.0111
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G77950 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.0989
| Unknown | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT2G15430 | PredictedSynthetic Rescue | FSW = 0.0189
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G18880 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25210 | Predictedinterologs mapping | FSW = 0.1385
| Unknown | TRANSCRIPTION REGULATOR |
AT5G66590 | Predictedco-fractionationCo-fractionation | FSW = 0.0615
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G04032 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0200
| Unknown | ZIP7 (ZINC TRANSPORTER 7 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT1G55910 | Predictedin vitro | FSW = 0.0833
| Unknown | ZIP11 (ZINC TRANSPORTER 11 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT5G10330 | PredictedCo-purification | FSW = 0.0587
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT3G44320 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.0654
| Unknown | NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT1G06090 | Predictedinterologs mappinginterologs mapping | FSW = 0.1437
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
AT1G22550 | Predictedco-fractionationCo-fractionation | FSW = 0.1154
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G29800 | Predictedco-fractionationCo-fractionation | FSW = 0.2551
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT2G31260 | Predictedco-fractionationCo-fractionation | FSW = 0.0736
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G32220 | Predictedco-fractionationCo-fractionation | FSW = 0.0729
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT2G47090 | Predictedinterologs mappingco-fractionationCo-fractionation | FSW = 0.1269
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G14090 | Predictedinterologs mapping | FSW = 0.0262
| Unknown | ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING |
AT3G15470 | Predictedco-fractionationCo-fractionation | FSW = 0.0294
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT3G62770 | Predictedco-fractionationCo-fractionation | FSW = 0.0440
| Unknown | ATATG18A |
AT3G62930 | Predictedco-fractionationCo-fractionation | FSW = 0.0729
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
AT1G05660 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT3G47610 | PredictedSynthetic Rescue | FSW = 0.0147
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G20020 | Predictedtwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0159
| Unknown | UNKNOWN PROTEIN |
AT4G25950 | Predictedinterologs mapping | FSW = 0.0180
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G25850 | Predictedco-fractionationCo-fractionation | FSW = 0.0716
| Unknown | ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B) OXYSTEROL BINDING |
AT5G13150 | Predictedinterologs mappinginterologs mapping | FSW = 0.0478
| Unknown | ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING |
AT5G14850 | Predictedtwo hybrid | FSW = 0.0582
| Unknown | MANNOSYLTRANSFERASE PUTATIVE |
AT5G42190 | Predictedco-fractionationCo-fractionation | FSW = 0.0515
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G49840 | Predictedco-fractionationCo-fractionation | FSW = 0.0744
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G61330 | Predictedco-fractionationCo-fractionation | FSW = 0.1323
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT5G67220 | Predictedbiochemicalinterologs mapping | FSW = 0.0711
| Unknown | NITROGEN REGULATION FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454