Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G19690 - ( IRT1 (iron-regulated transporter 1) cadmium ion transmembrane transporter/ copper uptake transmembrane transporter/ iron ion transmembrane transporter/ manganese ion transmembrane transporter/ zinc ion transmembrane transporter )

45 Proteins interacs with AT4G19690
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27090

Predicted

Synthetic Rescue

FSW = 0.0503

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT1G79550

Predicted

co-fractionation

Co-fractionation

FSW = 0.2356

Class C:

plasma membrane

PGK (PHOSPHOGLYCERATE KINASE) PHOSPHOGLYCERATE KINASE
AT4G36130

Predicted

co-fractionation

Co-fractionation

FSW = 0.0456

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L8 (RPL8C)
AT3G58730

Predicted

co-fractionation

Co-fractionation

FSW = 0.0456

Class C:

plasma membrane

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT3G05560

Predicted

co-fractionation

Co-fractionation

FSW = 0.1155

Class C:

plasma membrane

60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT5G58800

Predicted

co-fractionation

Co-fractionation

FSW = 0.1403

Class C:

plasma membrane

QUINONE REDUCTASE FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0431

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G19860

Predicted

co-fractionation

Co-fractionation

FSW = 0.0658

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT3G14420

Predicted

Co-purification

biochemical

FSW = 0.1370

Unknown

(S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE
AT3G03920

Predicted

co-fractionation

Co-fractionation

FSW = 0.0311

Unknown

GAR1 RNA-BINDING REGION FAMILY PROTEIN
AT3G20550

Predicted

Co-purification

Phenotypic Enhancement

interologs mapping

FSW = 0.4036

Unknown

DDL (DAWDLE)
AT3G62030

Predicted

interologs mapping

co-fractionation

Co-fractionation

FSW = 0.1354

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4)
AT2G39290

Predicted

two hybrid

FSW = 0.0298

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT1G19660

Predicted

Synthetic Lethality

FSW = 0.0356

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT2G03870

Predicted

interologs mapping

FSW = 0.0111

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G77950

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.0989

Unknown

AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT2G15430

Predicted

Synthetic Rescue

FSW = 0.0189

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G18880

Predicted

two hybrid

FSW = 0.0171

Unknown

AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT4G25210

Predicted

interologs mapping

FSW = 0.1385

Unknown

TRANSCRIPTION REGULATOR
AT5G66590

Predicted

co-fractionation

Co-fractionation

FSW = 0.0615

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G04032

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0200

Unknown

ZIP7 (ZINC TRANSPORTER 7 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G55910

Predicted

in vitro

FSW = 0.0833

Unknown

ZIP11 (ZINC TRANSPORTER 11 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT5G10330Predicted

Co-purification

FSW = 0.0587

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT3G44320

Predicted

Co-purification

Affinity Capture-MS

FSW = 0.0654

Unknown

NIT3 (NITRILASE 3) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE
AT1G06090

Predicted

interologs mapping

interologs mapping

FSW = 0.1437

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G22550

Predicted

co-fractionation

Co-fractionation

FSW = 0.1154

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G29800

Predicted

co-fractionation

Co-fractionation

FSW = 0.2551

Unknown

PHOSPHOINOSITIDE BINDING / ZINC ION BINDING
AT2G31260

Predicted

co-fractionation

Co-fractionation

FSW = 0.0736

Unknown

APG9 (AUTOPHAGY 9)
AT2G32220

Predicted

co-fractionation

Co-fractionation

FSW = 0.0729

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27A)
AT2G47090

Predicted

interologs mapping

co-fractionation

Co-fractionation

FSW = 0.1269

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G14090

Predicted

interologs mapping

FSW = 0.0262

Unknown

ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING
AT3G15470

Predicted

co-fractionation

Co-fractionation

FSW = 0.0294

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT3G62770

Predicted

co-fractionation

Co-fractionation

FSW = 0.0440

Unknown

ATATG18A
AT3G62930

Predicted

co-fractionation

Co-fractionation

FSW = 0.0729

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT1G05660

Predicted

Affinity Capture-MS

FSW = 0.0156

Unknown

POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE
AT3G47610

Predicted

Synthetic Rescue

FSW = 0.0147

Unknown

TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT4G20020

Predicted

two hybrid

Affinity Capture-Western

interologs mapping

FSW = 0.0159

Unknown

UNKNOWN PROTEIN
AT4G25950

Predicted

interologs mapping

FSW = 0.0180

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G25850

Predicted

co-fractionation

Co-fractionation

FSW = 0.0716

Unknown

ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B) OXYSTEROL BINDING
AT5G13150

Predicted

interologs mapping

interologs mapping

FSW = 0.0478

Unknown

ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT5G14850

Predicted

two hybrid

FSW = 0.0582

Unknown

MANNOSYLTRANSFERASE PUTATIVE
AT5G42190

Predicted

co-fractionation

Co-fractionation

FSW = 0.0515

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G49840

Predicted

co-fractionation

Co-fractionation

FSW = 0.0744

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G61330

Predicted

co-fractionation

Co-fractionation

FSW = 0.1323

Unknown

RRNA PROCESSING PROTEIN-RELATED
AT5G67220

Predicted

biochemical

interologs mapping

FSW = 0.0711

Unknown

NITROGEN REGULATION FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454