Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G20020 - ( unknown protein )
18 Proteins interacs with AT4G20020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G44110 | PredictedAffinity Capture-Western | FSW = 0.0431
| Unknown | ATJ3 PROTEIN BINDING |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0270
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT1G48860 | PredictedSynthetic Lethality | FSW = 0.0268
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT4G34460 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G71860 | Predictedsynthetic growth defect | FSW = 0.0227
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT4G19690 | Predictedtwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0159
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT1G28460 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.0244
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G56710 | PredictedAffinity Capture-Westerntwo hybridinterologs mappingsynthetic growth defect | FSW = 0.0213
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT2G34180 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G03340 | PredictedAffinity Capture-Western | FSW = 0.0155
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT4G38250 | PredictedPhenotypic Suppression | FSW = 0.0256
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G40440 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE |
AT3G58560 | PredictedAffinity Capture-MS | FSW = 0.0055
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G54470 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS) |
AT1G77470 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0496
| Unknown | REPLICATION FACTOR C 36 KDA PUTATIVE |
AT1G63160 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0287
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G10350 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0315
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G02690 | Predictedtwo hybridCo-expression | FSW = 0.0064
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454