Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT4G20280 - ( TAF11 (TBP-ASSOCIATED FACTOR 11) DNA binding / RNA polymerase II transcription factor/ transcription initiation factor )

40 Proteins interacs with AT4G20280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G17440

Experimental

two hybrid

FSW = 0.1944

Unknown

EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G02680

Experimental

two hybrid

FSW = 0.0495

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G31720

Experimental

two hybrid

FSW = 0.0522

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT5G43130

Experimental

two hybrid

FSW = 0.1701

Unknown

TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR
AT3G10070

Experimental

two hybrid

FSW = 0.0544

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT4G33650

Predicted

Synthetic Rescue

FSW = 0.0488

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT4G12610

Predicted

Co-purification

Reconstituted Complex

FSW = 0.0263

Unknown

TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT1G74710

Predicted

Synthetic Rescue

FSW = 0.0216

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT1G48860

Predicted

synthetic growth defect

FSW = 0.0382

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT1G10070

Predicted

biochemical

FSW = 0.0371

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G13120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.2400

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT4G35800

Predicted

Co-purification

Reconstituted Complex

FSW = 0.0269

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G06270

Predicted

two hybrid

FSW = 0.0233

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE
AT5G61510

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G53960

Predicted

Affinity Capture-Western

FSW = 0.0625

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G26600

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT5G08190

Predicted

two hybrid

two hybrid

FSW = 0.0431

Unknown

NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR
AT4G20810

Predicted

Reconstituted Complex

Co-purification

FSW = 0.0749

Unknown

TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT5G25150

Predicted

in vivo

in vitro

FSW = 0.0601

Unknown

TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR
AT5G24090

Predicted

Synthetic Lethality

FSW = 0.1019

Unknown

ACIDIC ENDOCHITINASE (CHIB1)
AT4G39200

Predicted

synthetic growth defect

FSW = 0.0720

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT2G17800

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1258

Unknown

ARAC1 GTP BINDING
AT5G51660

Predicted

in vitro

FSW = 0.0747

Unknown

CPSF160 NUCLEIC ACID BINDING
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0497

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G55060

Predicted

Affinity Capture-Western

Phenotypic Suppression

Reconstituted Complex

FSW = 0.0692

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.0037

Unknown

CORNICHON FAMILY PROTEIN
AT1G74810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.2945

Unknown

BOR5 ANION EXCHANGER
AT2G31900

Predicted

Affinity Capture-MS

FSW = 0.0953

Unknown

XIF MOTOR
AT2G43360

Predicted

Affinity Capture-MS

FSW = 0.0544

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0519

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0358

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G10210

Predicted

biochemical

FSW = 0.0725

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G58520

Predicted

Affinity Capture-Western

FSW = 0.0967

Unknown

HYDROLASE ACTING ON ESTER BONDS / LIPASE
AT1G66240

Predicted

Affinity Capture-MS

FSW = 0.1569

Unknown

ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT4G25950

Predicted

Affinity Capture-MS

FSW = 0.0697

Unknown

VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT5G15240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1409

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G19150

Predicted

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

FSW = 0.0393

Unknown

CARBOHYDRATE KINASE FAMILY
AT5G60550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1862

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT4G35620

Predicted

Affinity Capture-MS

FSW = 0.0319

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06150

Predicted

Affinity Capture-MS

FSW = 0.0518

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454