Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G20280 - ( TAF11 (TBP-ASSOCIATED FACTOR 11) DNA binding / RNA polymerase II transcription factor/ transcription initiation factor )
40 Proteins interacs with AT4G20280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G17440 | Experimentaltwo hybrid | FSW = 0.1944
| Unknown | EER4 (ENHANCED ETHYLENE RESPONSE 4) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G02680 | Experimentaltwo hybrid | FSW = 0.0495
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G31720 | Experimentaltwo hybrid | FSW = 0.0522
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT5G43130 | Experimentaltwo hybrid | FSW = 0.1701
| Unknown | TAF4 (TBP-ASSOCIATED FACTOR 4) TRANSCRIPTION INITIATION FACTOR |
AT3G10070 | Experimentaltwo hybrid | FSW = 0.0544
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT4G33650 | PredictedSynthetic Rescue | FSW = 0.0488
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT4G12610 | PredictedCo-purificationReconstituted Complex | FSW = 0.0263
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G74710 | PredictedSynthetic Rescue | FSW = 0.0216
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT1G48860 | Predictedsynthetic growth defect | FSW = 0.0382
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G10070 | Predictedbiochemical | FSW = 0.0371
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G13120 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.2400
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT4G35800 | PredictedCo-purificationReconstituted Complex | FSW = 0.0269
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G06270 | Predictedtwo hybrid | FSW = 0.0233
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT5G61510 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT3G53960 | PredictedAffinity Capture-Western | FSW = 0.0625
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G26600 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G08190 | Predictedtwo hybridtwo hybrid | FSW = 0.0431
| Unknown | NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G20810 | PredictedReconstituted ComplexCo-purification | FSW = 0.0749
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT5G25150 | Predictedin vivoin vitro | FSW = 0.0601
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.1019
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT4G39200 | Predictedsynthetic growth defect | FSW = 0.0720
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G17800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1258
| Unknown | ARAC1 GTP BINDING |
AT5G51660 | Predictedin vitro | FSW = 0.0747
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G55060 | PredictedAffinity Capture-WesternPhenotypic SuppressionReconstituted Complex | FSW = 0.0692
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G62880 | PredictedAffinity Capture-MS | FSW = 0.0037
| Unknown | CORNICHON FAMILY PROTEIN |
AT1G74810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.2945
| Unknown | BOR5 ANION EXCHANGER |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0953
| Unknown | XIF MOTOR |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G12200 | PredictedAffinity Capture-MS | FSW = 0.0519
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0358
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G10210 | Predictedbiochemical | FSW = 0.0725
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G58520 | PredictedAffinity Capture-Western | FSW = 0.0967
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G66240 | PredictedAffinity Capture-MS | FSW = 0.1569
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT4G25950 | PredictedAffinity Capture-MS | FSW = 0.0697
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G15240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1409
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G19150 | PredictedAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.0393
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G60550 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.1862
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.0319
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0518
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454