Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G20325 - ( unknown protein )
36 Proteins interacs with AT4G20325Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09650 | Predictedtwo hybrid | FSW = 0.0231
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G17810 | Predictedtwo hybrid | FSW = 0.0410
| Unknown | DIHYDROOROTATE DEHYDROGENASE FAMILY PROTEIN / DIHYDROOROTATE OXIDASE FAMILY PROTEIN |
AT2G37020 | Predictedtwo hybrid | FSW = 0.0316
| Unknown | DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G23740 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G21450 | Predictedtwo hybrid | FSW = 0.0234
| Unknown | VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN |
AT5G54110 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED) STRUCTURAL MOLECULE |
AT5G63880 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | VPS201 |
AT5G06260 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | NUCLEOLAR PROTEIN-RELATED |
AT5G06550 | Predictedtwo hybrid | FSW = 0.0262
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN CELL SURFACE RECEPTOR LINKED SIGNAL TRANSDUCTION EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) TRANSCRIPTION FACTOR JUMONJI/ASPARTYL BETA-HYDROXYLASE (INTERPROIPR003347) TRANSCRIPTION FACTOR JUMONJI (INTERPROIPR013129) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSFERASE TRANSFERRING GLYCOSYL GROUPS (TAIRAT1G782801) HAS 1299 BLAST HITS TO 1289 PROTEINS IN 204 SPECIES ARCHAE - 0 BACTERIA - 195 METAZOA - 777 FUNGI - 106 PLANTS - 94 VIRUSES - 0 OTHER EUKARYOTES - 127 (SOURCE NCBI BLINK) |
AT2G28910 | Predictedtwo hybrid | FSW = 0.0578
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G55770 | Predictedtwo hybrid | FSW = 0.0195
| Unknown | LIM DOMAIN-CONTAINING PROTEIN |
AT4G02580 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT PUTATIVE |
AT5G26980 | Predictedtwo hybrid | FSW = 0.0333
| Unknown | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT5G03840 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | TFL1 (TERMINAL FLOWER 1) PHOSPHATIDYLETHANOLAMINE BINDING |
AT1G79650 | Predictedtwo hybrid | FSW = 0.0600
| Unknown | RAD23 DAMAGED DNA BINDING |
AT3G05210 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT4G30800 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT5G38470 | Predictedtwo hybrid | FSW = 0.0095
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G02330 | Predictedtwo hybrid | FSW = 0.0821
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 59 (INTERPROIPR010756) HAS 1111 BLAST HITS TO 862 PROTEINS IN 155 SPECIES ARCHAE - 2 BACTERIA - 54 METAZOA - 381 FUNGI - 93 PLANTS - 45 VIRUSES - 5 OTHER EUKARYOTES - 531 (SOURCE NCBI BLINK) |
AT1G10170 | Predictedtwo hybrid | FSW = 0.0257
| Unknown | ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G27530 | Predictedtwo hybrid | FSW = 0.0586
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UBIQUITIN-CONJUGATING ENZYME/RWD-LIKE (INTERPROIPR016135) UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 (INTERPROIPR014806) HAS 183 BLAST HITS TO 183 PROTEINS IN 80 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 126 FUNGI - 0 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 36 (SOURCE NCBI BLINK) |
AT1G28120 | Predictedtwo hybrid | FSW = 0.0821
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S UBIQUITIN THIOESTERASE OTUBAIN (INTERPROIPR016615) OVARIAN TUMOUR OTUBAIN (INTERPROIPR003323) HAS 295 BLAST HITS TO 295 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 150 FUNGI - 50 PLANTS - 47 VIRUSES - 0 OTHER EUKARYOTES - 48 (SOURCE NCBI BLINK) |
AT1G47510 | Predictedtwo hybrid | FSW = 0.0373
| Unknown | 5PTASE11 (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 11) HYDROLASE/ PHOSPHATIDYLINOSITOL-345-TRISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-35-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G07790 | Predictedtwo hybrid | FSW = 0.0137
| Unknown | DGCR14-RELATED |
AT3G15140 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT4G08320 | Predictedtwo hybrid | FSW = 0.0082
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G15802 | Predictedtwo hybrid | FSW = 0.0373
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S HEAT SHOCK FACTOR BINDING 1 (INTERPROIPR009643) HAS 178 BLAST HITS TO 178 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 122 FUNGI - 0 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK) |
AT4G16710 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
AT4G19190 | Predictedtwo hybrid | FSW = 0.0434
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT5G02760 | Predictedtwo hybrid | FSW = 0.0275
| Unknown | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN / PP2C FAMILY PROTEIN |
AT5G03790 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | HB51 DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT5G18230 | Predictedtwo hybrid | FSW = 0.0390
| Unknown | TRANSCRIPTION REGULATOR NOT2/NOT3/NOT5 FAMILY PROTEIN |
AT5G21274 | Predictedtwo hybrid | FSW = 0.0027
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT5G22400 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT5G51170 | Predictedtwo hybrid | FSW = 0.0224
| Unknown | UNKNOWN PROTEIN |
AT5G56750 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | NDR FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454