Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G20400 - ( transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein )
22 Proteins interacs with AT4G20400Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G30860 | PredictedColocalization | FSW = 0.0817
| Class C:nucleus | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
AT3G13445 | PredictedReconstituted Complex | FSW = 0.0050
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G02520 | PredictedPhenotypic Enhancement | FSW = 0.0397
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G48470 | PredictedPhenotypic Enhancement | FSW = 0.0156
| Unknown | EMB2423 (EMBRYO DEFECTIVE 2423) |
AT3G61740 | PredictedPhenotypic Enhancement | FSW = 0.0105
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G42400 | PredictedPhenotypic Enhancement | FSW = 0.0602
| Unknown | SDG25 (SET DOMAIN PROTEIN 25) |
AT3G12280 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0048
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G51290 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1600
| Unknown | PROLINE-RICH FAMILY PROTEIN |
AT1G17690 | PredictedAffinity Capture-MS | FSW = 0.1259
| Unknown | UNKNOWN PROTEIN |
AT1G30220 | PredictedCo-purificationbiochemicalReconstituted ComplexAffinity Capture-Western | FSW = 0.0183
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G33560 | PredictedPhenotypic Enhancement | FSW = 0.0064
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT2G43650 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
AT4G04210 | PredictedPhenotypic Enhancement | FSW = 0.0312
| Unknown | PUX4 PROTEIN BINDING |
AT1G02730 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
AT1G23460 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | POLYGALACTURONASE |
AT4G25120 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0325
| Unknown | ORMDL FAMILY PROTEIN |
AT5G44750 | PredictedPhenotypic Enhancement | FSW = 0.0337
| Unknown | REV1 DNA-DIRECTED DNA POLYMERASE |
AT5G59140 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | SKP1 FAMILY PROTEIN |
AT5G60340 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G10390 | Predictedbiochemicalbiochemical | FSW = 0.0464
| Unknown | HISTONE H3 |
AT5G10400 | Predictedbiochemicalbiochemical | FSW = 0.0411
| Unknown | HISTONE H3 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454