Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G21100 - ( DDB1B (Damaged DNA Binding Protein 1 B) damaged DNA binding / protein binding )

20 Proteins interacs with AT4G21100
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G32950

Experimental

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1895

Class B:

nucleus

extracellular

cytosol

Class D:

nucleus (p = 0.78)

COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G65030

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.1071

Class B:

nucleus

extracellular

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G10180

Experimental

Affinity Capture-Western

FSW = 0.3556

Class B:

nucleus

extracellular

Class D:

plastid (p = 0.78)

DET1 (DE-ETIOLATED 1) CATALYTIC
AT2G46340

Experimental

Reconstituted Complex

Affinity Capture-Western

FSW = 0.2188

Class B:

nucleus

extracellular

Class D:

nucleus (p = 0.78)

SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER
AT4G15900

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.0229

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G35050

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.0775

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3) PROTEIN BINDING
AT5G46210

Experimental

Affinity Capture-Western

pull down

Reconstituted Complex

Affinity Capture-Western

in vitro

FSW = 0.3600

Unknown

CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G13480

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.0246

Unknown

FY PROTEIN BINDING
AT2G46280

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.0214

Unknown

TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G45620

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.2143

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G29830

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.0863

Unknown

VIP3 (VERNALIZATION INDEPENDENCE 3) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G19430

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.2500

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G11110

Experimental

Reconstituted Complex

FSW = 0.5143

Unknown

SPA2 (SPA1-RELATED 2) PROTEIN BINDING / SIGNAL TRANSDUCER
AT3G15354

Experimental

Reconstituted Complex

FSW = 0.4375

Unknown

SPA3 (SPA1-RELATED 3) PROTEIN BINDING / SIGNAL TRANSDUCER
AT1G53090

Experimental

Reconstituted Complex

FSW = 0.3889

Unknown

SPA4 (SPA1-RELATED 4) PROTEIN BINDING / SIGNAL TRANSDUCER
AT3G18524

Predicted

Phenotypic Enhancement

FSW = 0.0099

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT3G27640

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1219

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G05420

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7552

Unknown

DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING
AT3G61140

Predicted

Affinity Capture-Western

FSW = 0.0577

Unknown

FUS6 (FUSCA 6)
AT5G58760

Predicted

in vivo

in vitro

FSW = 0.1177

Unknown

DDB2 (DAMAGED DNA-BINDING 2) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454