Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G21160 - ( ZAC ARF GTPase activator/ phospholipid binding )
12 Proteins interacs with AT4G21160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT5G20020 | Predictedin vivo | FSW = 0.0159
| Unknown | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G37890 | PredictedGene fusion method | FSW = 0.1981
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G03730 | Predictedin vivoin vitro | FSW = 0.0259
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT5G14670 | Predictedin vivoin vivo | FSW = 0.0511
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G45740 | Predictedinterologs mapping | FSW = 0.0667
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
AT4G22756 | PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC |
AT4G31770 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN |
AT3G07940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0896
| Unknown | ZINC FINGER AND C2 DOMAIN PROTEIN PUTATIVE |
AT4G05330 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1184
| Unknown | AGD13 (ARF-GAP DOMAIN 13) ARF GTPASE ACTIVATOR/ ZINC ION BINDING |
AT2G26060 | PredictedGene fusion method | FSW = 0.0991
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT1G08290 | PredictedGene fusion method | FSW = 0.1793
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP3) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454