Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G21180 - ( ATERDJ2B heat shock protein binding / unfolded protein binding )
29 Proteins interacs with AT4G21180| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G66680
   | Predictedtwo hybridinteraction prediction | FSW = 0.1605
| Class C:plasma membraneendoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
| AT1G79940
| PredictedPhylogenetic profile method | FSW = 0.4816
| Class C:plasma membraneendoplasmic reticulum | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT5G23630
| PredictedPhenotypic Enhancement | FSW = 0.0917
| Class C:plasma membraneendoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
| AT5G28540
| Predictedinteraction prediction | FSW = 0.0324
| Class C:plasma membrane | BIP1 ATP BINDING |
| AT2G38940
| Predictedinteraction prediction | FSW = 0.0574
| Class C:plasma membrane | ATPT2 (ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G59820
| PredictedPhenotypic Enhancement | FSW = 0.0304
| Class C:plasma membrane | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
| AT3G54700
| Predictedtwo hybrid | FSW = 0.0642
| Class C:plasma membrane | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G20920
| Predictedin vitro | FSW = 0.0263
| Class C:plasma membrane | TRANSLOCATION PROTEIN-RELATED |
| AT5G60460
| Predictedin vitro | FSW = 0.0262
| Class C:plasma membrane | SEC61BETA FAMILY PROTEIN |
| AT1G53750
| PredictedAffinity Capture-Western | FSW = 0.0198
| Class C:plasma membrane | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
| AT4G01320
| PredictedPhenotypic Enhancement | FSW = 0.1652
| Class C:endoplasmic reticulum | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
| AT5G63840
| PredictedPhenotypic Enhancement | FSW = 0.1081
| Class C:endoplasmic reticulum | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT2G17520
| PredictedPhenotypic Enhancement | FSW = 0.1010
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
| AT1G67490
| PredictedPhenotypic Enhancement | FSW = 0.0794
| Class C:endoplasmic reticulum | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
| AT5G66020
| PredictedPhenotypic Enhancement | FSW = 0.0244
| Class C:endoplasmic reticulum | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
| AT5G13710
| PredictedPhenotypic Enhancement | FSW = 0.1176
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
| AT3G02580
| PredictedPhenotypic Enhancement | FSW = 0.0448
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
| AT3G60540
| Predictedin vitro | FSW = 0.1000
| Unknown | SEC61BETA FAMILY PROTEIN |
| AT1G78720
| PredictedCo-purificationCo-purificationCo-purificationtwo hybridinterologs mapping | FSW = 0.0952
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
| AT2G27600
| PredictedPhenotypic Enhancement | FSW = 0.0401
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT2G46280
| PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT3G55170
| PredictedSynthetic Rescue | FSW = 0.0250
| Unknown | 60S RIBOSOMAL PROTEIN L35 (RPL35C) |
| AT3G55380
| PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
| AT2G23070
| Predictedbiochemical | FSW = 0.0168
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT2G34770
| PredictedPhenotypic Enhancement | FSW = 0.0435
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
| AT2G34980
| Predictedtwo hybridinteraction prediction | FSW = 0.0646
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
| AT4G17910
| PredictedAffinity Capture-MS | FSW = 0.0856
| Unknown | TRANSFERASE TRANSFERRING ACYL GROUPS |
| AT4G24920
| PredictedCo-purification | FSW = 0.1504
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE |
| AT4G40042
| Predictedinteraction prediction | FSW = 0.1299
| Unknown | PEPTIDASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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