Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G21670 - ( CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) double-stranded RNA binding / nucleotide phosphatase )

11 Proteins interacs with AT4G21670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G35670

Experimental

two hybrid

FSW = 0.0248

Class A:

nucleus

Class B:

plasma membrane

cytosol

ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE
AT5G05410

Experimental

FSW = 0.0336

Class A:

nucleus

Class D:

nucleus (p = 0.78)

DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G52890

Experimental

two hybrid

FSW = 0.1025

Class A:

nucleus

Class D:

nucleus (p = 0.78)

ANAC019 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 19) TRANSCRIPTION FACTOR
AT1G22640

Experimental

two hybrid

FSW = 0.1426

Class A:

nucleus

Class D:

nucleus (p = 0.78)

MYB3 (MYB DOMAIN PROTEIN 3) DNA BINDING / TRANSCRIPTION FACTOR
AT4G35800

Experimental

biochemical

FSW = 0.0074

Class B:

plastid

nucleus

Class D:

nucleus (p = 0.78)

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G20110

Experimental

two hybrid

FSW = 0.0656

Class B:

peroxisome

nucleus

Class D:

nucleus (p = 0.78)

ZINC FINGER (FYVE TYPE) FAMILY PROTEIN
AT3G49250

Experimental

two hybrid

FSW = 0.1131

Unknown

DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)
AT3G26730

Experimental

two hybrid

FSW = 0.1426

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT4G28760

Experimental

two hybrid

FSW = 0.1931

Unknown

UNKNOWN PROTEIN
AT3G54290

Experimental

two hybrid

FSW = 0.2346

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HAEMERYTHRIN/HHE CATION-BINDING MOTIF (INTERPROIPR012312) HAS 35 BLAST HITS TO 35 PROTEINS IN 7 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 0 FUNGI - 0 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT2G28840

Experimental

two hybrid

FSW = 0.0306

Unknown

ANKYRIN REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454