Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G21800 - ( QQT2 (quatre-quart2) ATP binding / nucleotide binding )
66 Proteins interacs with AT4G21800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G22370 | Experimentaltwo hybridconfocal microscopy | FSW = 0.0296
| Unknown | QQT1 (QUATRE-QUART 1) ATP BINDING / NUCLEOTIDE BINDING |
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G19980 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0376
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G36790 | PredictedAffinity Capture-MS | FSW = 0.0694
| Unknown | PHOSPHOGLYCOLATE PHOSPHATASE PUTATIVE |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0691
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G06850 | PredictedAffinity Capture-MS | FSW = 0.0939
| Unknown | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) HYDROLASE ACTING ON GLYCOSYL BONDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.1171
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G44610 | PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G13050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0371
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT2G47160 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1070
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.0689
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G40370 | PredictedAffinity Capture-MS | FSW = 0.0050
| Unknown | GLUTAREDOXIN PUTATIVE |
AT5G12480 | Predictedbiochemical | FSW = 0.0023
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G26340 | PredictedAffinity Capture-MS | FSW = 0.0154
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G22780 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.0046
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0335
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G17520 | Predictedinteraction prediction | FSW = 0.0258
| Unknown | NUCLEAR RNA-BINDING PROTEIN PUTATIVE |
AT1G70580 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G25150 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0029
| Unknown | TAF5 (TBP-ASSOCIATED FACTOR 5) NUCLEOTIDE BINDING / TRANSCRIPTION REGULATOR |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0675
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT2G14580 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | ATPRB1 |
AT4G31470 | PredictedAffinity Capture-MS | FSW = 0.0361
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G66130 | PredictedAffinity Capture-MS | FSW = 0.0026
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT2G17800 | PredictedReconstituted Complex | FSW = 0.0378
| Unknown | ARAC1 GTP BINDING |
AT4G27070 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.1072
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G77990 | PredictedReconstituted Complex | FSW = 0.0560
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G10920 | PredictedPhenotypic Enhancement | FSW = 0.1768
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT3G14600 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AC) |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0593
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT4G12790 | Predictedtwo hybridtwo hybrid | FSW = 0.0214
| Unknown | ATP-BINDING FAMILY PROTEIN |
AT1G03070 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | GLUTAMATE BINDING |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.0371
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0775
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.0600
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G44820 | PredictedAffinity Capture-MS | FSW = 0.0564
| Unknown | UNKNOWN PROTEIN |
AT2G46710 | PredictedReconstituted ComplexReconstituted ComplexReconstituted Complextwo hybridAffinity Capture-WesternCo-purification | FSW = 0.0927
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT2G46860 | PredictedAffinity Capture-Western | FSW = 0.0453
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G12200 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.1049
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G02100 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT1G47830 | PredictedAffinity Capture-MS | FSW = 0.0076
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0112
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0422
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G37840 | Predictedbiochemical | FSW = 0.0117
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G12760 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK) |
AT3G14090 | PredictedSynthetic Rescue | FSW = 0.0086
| Unknown | ATEXO70D3 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN D3) PROTEIN BINDING |
AT3G25597 | PredictedAffinity Capture-MS | FSW = 0.0474
| Unknown | UNKNOWN PROTEIN |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G04955 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE |
AT4G36630 | PredictedAffinity Capture-MS | FSW = 0.0289
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT5G13860 | PredictedReconstituted ComplexReconstituted ComplexProtein-peptide | FSW = 0.0496
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14050 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G15070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0674
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G15240 | PredictedReconstituted Complex | FSW = 0.0602
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0294
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G21170 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT5G24510 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT5G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0125
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G40440 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0105
| Unknown | ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3) MAP KINASE KINASE |
AT5G45620 | PredictedReconstituted Complex | FSW = 0.0231
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G01390 | PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G41190 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0477
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT1G50370 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G72340 | Predictedinteraction prediction | FSW = 0.0039
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454