Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G21980 - ( APG8A (AUTOPHAGY 8A) APG8 activating enzyme/ APG8-specific protease/ Atg8 ligase )

51 Proteins interacs with AT4G21980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G45170

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1837

Class C:

vacuole

cytosol

cytoskeleton

ATATG8E MICROTUBULE BINDING
AT4G16520

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1475

Class C:

vacuole

cytosol

cytoskeleton

ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING
AT3G15580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2388

Class C:

vacuole

cytoskeleton

APG8H (AUTOPHAGY 8H) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE/ MICROTUBULE BINDING
AT3G06420

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2314

Class C:

vacuole

cytoskeleton

ATG8H (AUTOPHAGY 8H) MICROTUBULE BINDING
AT2G05630

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1744

Class C:

vacuole

cytoskeleton

AUTOPHAGY 8D (APG8D)
AT3G60640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2955

Class C:

vacuole

cytoskeleton

ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING
AT4G04620

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2388

Class C:

vacuole

cytoskeleton

ATG8B (AUTOPHAGY 8B) MICROTUBULE BINDING
AT1G62040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2125

Class C:

vacuole

cytoskeleton

ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING
AT4G16660

Predicted

Phenotypic Suppression

FSW = 0.1121

Class C:

vacuole

HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE
AT4G12650

Predicted

Phenotypic Suppression

FSW = 0.0497

Class C:

vacuole

LOCATED IN INTEGRAL TO MEMBRANE GOLGI APPARATUS PLASMA MEMBRANE VACUOLE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NONASPANIN (TM9SF) (INTERPROIPR004240) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G351601) HAS 983 BLAST HITS TO 980 PROTEINS IN 161 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 434 FUNGI - 144 PLANTS - 228 VIRUSES - 0 OTHER EUKARYOTES - 177 (SOURCE NCBI BLINK)
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0453

Class C:

vacuole

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G19860

Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT5G09660

Predicted

Phenotypic Suppression

FSW = 0.0435

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT1G32470

Predicted

Phenotypic Suppression

FSW = 0.0423

Unknown

GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE
AT5G51820

Predicted

Phenotypic Suppression

FSW = 0.1234

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT2G01630

Predicted

Phenotypic Suppression

FSW = 0.0548

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE
AT4G33090

Predicted

Phenotypic Suppression

FSW = 0.0714

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.0548

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT3G52250

Predicted

Phenotypic Suppression

FSW = 0.0839

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT1G72330

Predicted

two hybrid

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0501

Unknown

ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE
AT3G49920

Predicted

Phenotypic Suppression

FSW = 0.0428

Unknown

VDAC5 (VOLTAGE DEPENDENT ANION CHANNEL 5) VOLTAGE-GATED ANION CHANNEL
AT3G20970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0340

Unknown

NFU4 STRUCTURAL MOLECULE
AT3G10920

Predicted

Affinity Capture-Western

FSW = 0.0391

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT2G19980

Predicted

Phenotypic Suppression

FSW = 0.1180

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.1182

Unknown

ARA6 GTP BINDING / GTPASE
AT5G08335

Predicted

Phenotypic Suppression

FSW = 0.0528

Unknown

ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
AT4G10920

Predicted

Phenotypic Suppression

FSW = 0.0276

Unknown

KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G52300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0357

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT4G27070

Predicted

Phenotypic Suppression

FSW = 0.0667

Unknown

TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE
AT4G17190

Predicted

Phenotypic Suppression

FSW = 0.1002

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G17810

Predicted

Phenotypic Suppression

FSW = 0.0166

Unknown

BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL
AT1G16360

Predicted

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.0234

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G33090

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0369

Unknown

MATE EFFLUX FAMILY PROTEIN
AT1G02100

Predicted

Phenotypic Suppression

FSW = 0.0761

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G34580

Predicted

Phenotypic Suppression

FSW = 0.0581

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT2G24960

Predicted

Phenotypic Suppression

FSW = 0.0679

Unknown

UNKNOWN PROTEIN
AT2G31260

Predicted

Phenotypic Suppression

FSW = 0.1040

Unknown

APG9 (AUTOPHAGY 9)
AT2G44065

Predicted

Phenotypic Enhancement

FSW = 0.0889

Unknown

RIBOSOMAL PROTEIN L2 FAMILY PROTEIN
AT2G47570

Predicted

Phenotypic Suppression

FSW = 0.0817

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT2G48100

Predicted

Phenotypic Suppression

FSW = 0.0687

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G06470

Predicted

Phenotypic Enhancement

FSW = 0.0170

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G18660

Predicted

Phenotypic Suppression

FSW = 0.1088

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G59540Predicted

Phenotypic Suppression

FSW = 0.0856

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT4G19645

Predicted

Phenotypic Suppression

FSW = 0.0701

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT4G24160

Predicted

Phenotypic Suppression

FSW = 0.0139

Unknown

HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT5G01430

Predicted

Phenotypic Enhancement

FSW = 0.0978

Unknown

GOT1-LIKE FAMILY PROTEIN
AT5G10830

Predicted

Phenotypic Suppression

FSW = 0.0627

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT5G44830

Predicted

Phenotypic Enhancement

FSW = 0.0998

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G59490

Predicted

Phenotypic Suppression

FSW = 0.0336

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT5G64760

Predicted

Phenotypic Suppression

FSW = 0.1483

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT5G66640

Predicted

biochemical

FSW = 0.0181

Unknown

DAR3 (DA1-RELATED PROTEIN 3)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454