Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G22120 - ( early-responsive to dehydration protein-related / ERD protein-related )
78 Proteins interacs with AT4G22120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.1910
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G11260 | Predictedinterologs mapping | FSW = 0.0229
| Class C:plasma membrane | STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G60390 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1377
| Class C:plasma membrane | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G27970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3820
| Class C:plasma membrane | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT1G75840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3531
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4957
| Class C:plasma membrane | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT4G04340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0037
| Class C:plasma membrane | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G62300 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3185
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT3G53870 | PredictedPhenotypic Suppression | FSW = 0.0163
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT3G56760 | Predictedtwo hybrid | FSW = 0.0944
| Class C:plasma membrane | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT1G09640 | PredictedAffinity Capture-MS | FSW = 0.1908
| Class C:plasma membrane | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G45170 | PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | ATATG8E MICROTUBULE BINDING |
AT5G24780 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4098
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G29990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4445
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT2G19860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2261
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G74560 | Predictedtwo hybridtwo hybrid | FSW = 0.0093
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.2769
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.1107
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.2756
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5183
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.0648
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT4G23430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4372
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G07640 | PredictedAffinity Capture-MS | FSW = 0.0995
| Unknown | D2D4-DIENOYL-COA REDUCTASE-RELATED |
AT4G09800 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G44500 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2446
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.1554
| Unknown | HISTONE H2B PUTATIVE |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3683
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.1152
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5009
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3531
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4123
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G03950 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSco-fractionationCo-fractionationSynthetic Lethality | FSW = 0.0411
| Unknown | PROTEIN BINDING |
AT3G51860 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | CAX3 (CATION EXCHANGER 3) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER/ CATIONCATION ANTIPORTER |
AT1G10940 | Predictedtwo hybrid | FSW = 0.0053
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G20693 | Predictedtwo hybridtwo hybrid | FSW = 0.0102
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G24706 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3862
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5306
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT2G01770 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5022
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.1561
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G19910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5812
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G41530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4919
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G43360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5617
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3471
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G06470 | Predictedtwo hybrid | FSW = 0.0116
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.5188
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3222
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G44590 | Predictedtwo hybrid | FSW = 0.0995
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4488
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G50960 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT3G51880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4628
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G53730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5680
| Unknown | HISTONE H4 |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3901
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G62770 | PredictedAffinity Capture-MS | FSW = 0.1208
| Unknown | ATATG18A |
AT4G19645 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3967
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT1G16360 | Predictedtwo hybrid | FSW = 0.0266
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G61010 | Predictedtwo hybrid | FSW = 0.0095
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
AT1G64480 | PredictedAffinity Capture-MS | FSW = 0.2308
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.4524
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2362
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.3054
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G37760 | PredictedAffinity Capture-MS | FSW = 0.2766
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.3654
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G12690 | PredictedAffinity Capture-MS | FSW = 0.1773
| Unknown | AGC15 (AGC KINASE 15) KINASE |
AT3G54510 | Predictedbiochemical | FSW = 0.0314
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G17380 | PredictedAffinity Capture-MS | FSW = 0.3122
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G21490 | Predictedtwo hybrid | FSW = 0.0181
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G26810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3768
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G27960 | PredictedAffinity Capture-MS | FSW = 0.0374
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4418
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2839
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4060
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4686
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G24670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1312
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.5197
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT5G46150 | PredictedAffinity Capture-MS | FSW = 0.0691
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3102
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41700 | Predictedtwo hybrid | FSW = 0.0159
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.3023
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454