Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G22140 - ( DNA binding / protein binding / zinc ion binding )

73 Proteins interacs with AT4G22140
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

synthetic growth defect

FSW = 0.0083

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G33140

Predicted

Synthetic Lethality

FSW = 0.0217

Unknown

PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0089

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G20620

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0316

Unknown

CAT3 (CATALASE 3) CATALASE
AT5G09660

Predicted

synthetic growth defect

FSW = 0.0790

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G20550

Predicted

synthetic growth defect

Phenotypic Suppression

FSW = 0.0154

Unknown

DDL (DAWDLE)
AT5G59690Predicted

Affinity Capture-Western

FSW = 0.0992

Unknown

HISTONE H4
AT5G16630

Predicted

Phenotypic Suppression

FSW = 0.0425

Unknown

RAD4 DAMAGED DNA BINDING
AT3G57050

Predicted

Synthetic Lethality

FSW = 0.0120

Unknown

CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1022

Unknown

SEC22 TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0319

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G63680

Predicted

Affinity Capture-MS

FSW = 0.0204

Unknown

PYRUVATE KINASE PUTATIVE
AT1G04750

Predicted

synthetic growth defect

FSW = 0.0599

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT1G77210

Predicted

Affinity Capture-MS

FSW = 0.0290

Unknown

SUGAR TRANSPORTER PUTATIVE
AT3G18524

Predicted

Phenotypic Suppression

FSW = 0.0411

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT1G21700

Predicted

Phenotypic Suppression

FSW = 0.1497

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT5G19310

Predicted

synthetic growth defect

FSW = 0.1155

Unknown

HOMEOTIC GENE REGULATOR PUTATIVE
AT2G18510

Predicted

two hybrid

FSW = 0.0088

Unknown

EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G54610

Predicted

Synthetic Lethality

FSW = 0.0948

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G12810

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1644

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G13445

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0526

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.1258

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.0774

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G76300

Predicted

Synthetic Lethality

FSW = 0.0191

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT2G47620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1574

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT1G02740

Predicted

Phenotypic Enhancement

FSW = 0.0918

Unknown

CHROMATIN BINDING
AT2G36740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2283

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.1462

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G27470

Predicted

Phenotypic Suppression

FSW = 0.1340

Unknown

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT4G25340

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0411

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G08630

Predicted

Phenotypic Suppression

FSW = 0.0976

Unknown

DDT DOMAIN-CONTAINING PROTEIN
AT2G44950

Predicted

synthetic growth defect

FSW = 0.1190

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT3G07140

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

interologs mapping

FSW = 0.1111

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT5G41150

Predicted

Phenotypic Suppression

FSW = 0.0547

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT5G19910

Predicted

Phenotypic Enhancement

FSW = 0.1653

Unknown

SOH1 FAMILY PROTEIN
AT4G39100

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0309

Unknown

SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT5G54260

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.1075

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G23230

Predicted

Phenotypic Enhancement

FSW = 0.0351

Unknown

UNKNOWN PROTEIN
AT1G08880

Predicted

Phenotypic Suppression

FSW = 0.0598

Unknown

H2AXA DNA BINDING
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1051

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2080

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT3G46320Predicted

Affinity Capture-Western

FSW = 0.0809

Unknown

HISTONE H4
AT1G20693

Predicted

Synthetic Lethality

FSW = 0.0622

Unknown

HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR
AT1G33040

Predicted

Synthetic Lethality

FSW = 0.0090

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)
AT1G35350

Predicted

synthetic growth defect

FSW = 0.0614

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G47830

Predicted

synthetic growth defect

FSW = 0.0696

Unknown

CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.1233

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.2218

Unknown

SNL5 (SIN3-LIKE 5)
AT1G66590

Predicted

synthetic growth defect

FSW = 0.0713

Unknown

COX19 FAMILY PROTEIN
AT2G44150

Predicted

Phenotypic Enhancement

FSW = 0.0985

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G12200

Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1827

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22290

Predicted

synthetic growth defect

FSW = 0.0500

Unknown

UNKNOWN PROTEIN
AT3G22590

Predicted

Phenotypic Enhancement

FSW = 0.1443

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G26020

Predicted

Phenotypic Enhancement

FSW = 0.0155

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT4G21490

Predicted

synthetic growth defect

FSW = 0.0755

Unknown

NDB3 NADH DEHYDROGENASE
AT4G25120Predicted

two hybrid

FSW = 0.0135

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1093

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10390Predicted

Phenotypic Suppression

Affinity Capture-Western

FSW = 0.1293

Unknown

HISTONE H3
AT5G16170

Predicted

synthetic growth defect

FSW = 0.1009

Unknown

UNKNOWN PROTEIN
AT5G16980

Predicted

synthetic growth defect

FSW = 0.0803

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G43500

Predicted

Phenotypic Suppression

FSW = 0.1785

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45620

Predicted

Synthetic Lethality

FSW = 0.0729

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9)
AT5G53120

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0171

Unknown

SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE
AT5G53770

Predicted

Synthetic Lethality

FSW = 0.0865

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G55310

Predicted

Phenotypic Enhancement

FSW = 0.0848

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.1011

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G10400Predicted

Affinity Capture-Western

FSW = 0.1409

Unknown

HISTONE H3
AT5G41700

Predicted

Phenotypic Enhancement

FSW = 0.0670

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G65180

Predicted

Phenotypic Enhancement

FSW = 0.1155

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G66100

Predicted

Phenotypic Suppression

FSW = 0.1339

Unknown

LA DOMAIN-CONTAINING PROTEIN
AT5G67320

Predicted

Phenotypic Enhancement

FSW = 0.0817

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT4G04260

Predicted

Phylogenetic profile method

FSW = 0.0265

Unknown

BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454