Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G22220 - ( ISU1 structural molecule )

11 Proteins interacs with AT4G22220
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G06410

Experimental

two hybrid

protein complementation assay

FSW = 0.2801

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT3G01020

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.3478

Class C:

mitochondrion

ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE
AT4G04080

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.0933

Class C:

mitochondrion

ISU3 (ISCU-LIKE 3) STRUCTURAL MOLECULE
AT3G20970

Predicted

synthetic growth defect

FSW = 0.0157

Class C:

mitochondrion

NFU4 STRUCTURAL MOLECULE
AT5G65720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1667

Class C:

mitochondrion

NFS1 ATP BINDING / CYSTEINE DESULFURASE/ TRANSAMINASE
AT5G10450

Predicted

Affinity Capture-MS

FSW = 0.0103

Unknown

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G28190

Predicted

Synthetic Rescue

FSW = 0.0552

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT5G63110

Predicted

interologs mapping

FSW = 0.0105

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0033

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G13980

Predicted

biochemical

FSW = 0.0094

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT4G03240

Predicted

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.1381

Unknown

FH (FRATAXIN HOMOLOG)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454