Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G22380 - ( ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )
33 Proteins interacs with AT4G22380| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G20960
   | PredictedCo-purificationAffinity Capture-MSCo-purification | FSW = 0.0429
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G72440
| PredictedAffinity Capture-MS | FSW = 0.0883
| Class C:nucleus | EDA25 (EMBRYO SAC DEVELOPMENT ARREST 25) |
| AT5G04600
| PredictedAffinity Capture-MS | FSW = 0.0664
| Class C:nucleus | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G08180
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1894
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT4G17390
| PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0525
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
| AT3G05060
| Predictedtwo hybridtwo hybridAffinity Capture-MS | FSW = 0.0698
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT3G12860
| Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1236
| Class C:nucleus | NUCLEOLAR PROTEIN NOP56 PUTATIVE |
| AT3G62310
| PredictedAffinity Capture-MS | FSW = 0.1240
| Class C:nucleus | RNA HELICASE PUTATIVE |
| AT5G20160
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1707
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
| AT4G25630
| Predictedtwo hybridtwo hybrid | FSW = 0.1265
| Class C:nucleus | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
| AT2G41500
| PredictedAffinity Capture-MS | FSW = 0.1166
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0423
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT4G16720
| PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0624
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
| AT2G09990
| PredictedAffinity Capture-MS | FSW = 0.0569
| Unknown | 40S RIBOSOMAL PROTEIN S16 (RPS16A) |
| AT2G33340
| PredictedCo-purification | FSW = 0.0580
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT4G29810
| PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2) MAP KINASE KINASE/ KINASE |
| AT5G66130
| Predictedin vivotwo hybridAffinity Capture-MS | FSW = 0.0183
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
| AT2G33560
| Predictedtwo hybridtwo hybrid | FSW = 0.0096
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
| AT5G49010
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0421
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
| AT5G27640
| Predictedtwo hybridtwo hybrid | FSW = 0.0162
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
| AT1G31970
| PredictedAffinity Capture-MS | FSW = 0.1449
| Unknown | STRS1 (STRESS RESPONSE SUPPRESSOR 1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT1G49980
| PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
| AT1G60200
| PredictedAffinity Capture-MS | FSW = 0.1684
| Unknown | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G72320
| PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | APUM23 (ARABIDOPSIS PUMILIO 23) RNA BINDING / BINDING |
| AT2G01600
| PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
| AT2G25710
| PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | HCS1 (HOLOCARBOXYLASE SYNTHASE) BIOTIN-[ACETYL-COA-CARBOXYLASE] LIGASE/ CATALYTIC |
| AT3G11910
| PredictedAffinity Capture-MS | FSW = 0.0534
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT3G46960 | PredictedAffinity Capture-MS | FSW = 0.0818
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
| AT4G10480
| PredictedPhenotypic Enhancement | FSW = 0.0148
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
| AT4G33080
| PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | PROTEIN KINASE PUTATIVE |
| AT5G13780
| PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
| AT5G27740
| PredictedAffinity Capture-MS | FSW = 0.0394
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT4G12600
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5528
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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