Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G22540 - ( ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) oxysterol binding / phosphoinositide binding )

14 Proteins interacs with AT4G22540
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G30580

Predicted

Phenotypic Enhancement

FSW = 0.0554

Unknown

ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE
AT1G59820

Predicted

Affinity Capture-MS

FSW = 0.1071

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT3G03800

Predicted

Phenotypic Enhancement

FSW = 0.1296

Unknown

SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR
AT1G08820

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0962

Unknown

VAP27-2 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-2) STRUCTURAL MOLECULE
AT4G35020

Predicted

interologs mapping

FSW = 0.0426

Unknown

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT4G21450

Predicted

two hybrid

two hybrid

FSW = 0.1345

Unknown

VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN
AT5G47180

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0529

Unknown

VESICLE-ASSOCIATED MEMBRANE FAMILY PROTEIN / VAMP FAMILY PROTEIN
AT4G11420

Predicted

Affinity Capture-MS

FSW = 0.0270

Unknown

EIF3A (EUKARYOTIC TRANSLATION INITIATION FACTOR 3A) TRANSLATION INITIATION FACTOR
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0068

Unknown

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G08880

Predicted

Affinity Capture-MS

FSW = 0.0092

Unknown

H2AXA DNA BINDING
AT1G79990

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK)
AT4G12460

Predicted

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.2212

Unknown

ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) OXYSTEROL BINDING
AT3G06483

Predicted

biochemical

FSW = 0.0092

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT4G08500

Predicted

biochemical

FSW = 0.0140

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454