Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G22756 - ( SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-dimethyl-9beta19-cyclopropylsterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase/ catalytic )
32 Proteins interacs with AT4G22756Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | PredictedAffinity Capture-MS | FSW = 0.1254
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G15850 | PredictedAffinity Capture-MS | FSW = 0.1250
| Unknown | FAD5 (FATTY ACID DESATURASE 5) 160 MONOGALACTOSYLDIACYLGLYCEROL DESATURASE/ OXIDOREDUCTASE |
AT1G07420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0279
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G38200 | PredictedAffinity Capture-MS | FSW = 0.1947
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT1G23740 | PredictedAffinity Capture-MS | FSW = 0.3143
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT4G30950 | PredictedAffinity Capture-MS | FSW = 0.1531
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT1G22180 | PredictedAffinity Capture-MS | FSW = 0.1331
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G23700 | PredictedAffinity Capture-MS | FSW = 0.3667
| Unknown | ATCHX17 (CATION/H+ EXCHANGER 17) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT5G47700 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT2G29140 | PredictedAffinity Capture-MS | FSW = 0.3929
| Unknown | APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING |
AT1G07180 | PredictedAffinity Capture-MS | FSW = 0.1507
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT4G28220 | PredictedAffinity Capture-MS | FSW = 0.3879
| Unknown | NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE |
AT2G07687 | Predictedco-fractionationCo-fractionation | FSW = 0.0833
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 3 |
AT2G07727 | Predictedco-fractionationCo-fractionation | FSW = 0.0163
| Unknown | CYTOCHROME B (MTCYB) (COB) (CYTB) |
AT2G07741 | Predictedco-fractionationCo-fractionation | FSW = 0.0416
| Unknown | ATPASE SUBUNIT 6 PUTATIVE |
AT2G07695 | Predictedco-fractionationCo-fractionation | FSW = 0.0833
| Unknown | CYTOCHROME C OXIDASE SUBUNIT II PUTATIVE |
AT2G47620 | PredictedAffinity Capture-MS | FSW = 0.0471
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT4G25340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0030
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G07671 | Predictedco-fractionationCo-fractionation | FSW = 0.0327
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
ATMG01360 | Predictedco-fractionationCo-fractionation | FSW = 0.0910
| Unknown | CYTOCHROME C OXIDASE SUBUNIT 1 |
AT1G50060 | PredictedAffinity Capture-MS | FSW = 0.3765
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G21160 | PredictedAffinity Capture-MS | FSW = 0.0625
| Unknown | ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING |
AT1G68310 | PredictedAffinity Capture-MS | FSW = 0.3122
| Unknown | VACUOLAR SORTING SIGNAL BINDING |
AT3G08910 | PredictedAffinity Capture-MS | FSW = 0.3235
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G60860 | PredictedAffinity Capture-MS | FSW = 0.1279
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT3G58830 | Predictedsynthetic growth defect | FSW = 0.0176
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT4G30000 | PredictedAffinity Capture-MS | FSW = 0.0552
| Unknown | DIHYDROPTERIN PYROPHOSPHOKINASE PUTATIVE / DIHYDROPTEROATE SYNTHASE PUTATIVE / DHPS PUTATIVE |
AT5G06620 | PredictedAffinity Capture-MS | FSW = 0.2313
| Unknown | SDG38 (SET DOMAIN PROTEIN 38) |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0821
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G44635 | PredictedAffinity Capture-MS | FSW = 0.1477
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G29390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0270
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G22753 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0961
| Unknown | SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE 1-3) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ CATALYTIC |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454