Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23050 - ( protein kinase putative )
16 Proteins interacs with AT4G23050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G37870 | Experimentalprotein array | FSW = 0.1129
| Unknown | PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
AT4G28706 | Experimentalprotein array | FSW = 0.1500
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT5G56890 | Experimentalprotein array | FSW = 0.1800
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G35600 | Experimentalprotein array | FSW = 0.1793
| Unknown | CONNEXIN 32 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G66410 | Experimentalprotein array | FSW = 0.1352
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT3G23310 | Experimentalprotein array | FSW = 0.1270
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G63260 | Experimentalprotein array | FSW = 0.1203
| Unknown | ATMRK1 KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G31180 | Experimentalprotein array | FSW = 0.2344
| Unknown | MYB14 (MYB DOMAIN PROTEIN 14) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G23290 | Experimentalprotein array | FSW = 0.2540
| Unknown | ATMYB70 (MYB DOMAIN PROTEIN 70) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G69270 | Experimentalprotein array | FSW = 0.2571
| Unknown | RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1) KINASE/ PROTEIN BINDING / RECEPTOR SIGNALING PROTEIN SERINE/THREONINE KINASE |
ATMG00870 | Experimentalprotein array | FSW = 0.2540
| Unknown | HYPOTHETICAL PROTEIN |
AT3G50310 | Experimentalprotein array | FSW = 0.2344
| Unknown | MAPKKK20 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G37240 | Experimentalprotein array | FSW = 0.2540
| Unknown | UNKNOWN PROTEIN |
AT4G13020 | Experimentalprotein array | FSW = 0.0476
| Unknown | MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G12200 | Experimentalprotein array | FSW = 0.0210
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G51920 | Experimentalprotein array | FSW = 0.1642
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454