Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23460 - ( beta-adaptin putative )
24 Proteins interacs with AT4G23460Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G31700 | PredictedAffinity Capture-MS | FSW = 0.0356
| Class C:plasma membrane | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G62290 | Predictedin vivoin vitro | FSW = 0.0490
| Class C:plasma membrane | ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT3G08530 | Predictedin vitrosynthetic growth defectsynthetic growth defectsynthetic growth defectAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1284
| Class C:plasma membrane | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G52640 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0158
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G16780 | PredictedAffinity Capture-MS | FSW = 0.0349
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L19 (RPL19B) |
AT4G11380 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2639
| Class C:plasma membrane | BETA-ADAPTIN PUTATIVE |
AT4G32760 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.2450
| Class C:plasma membrane | PROTEIN TRANSPORTER |
AT2G37600 | PredictedAffinity Capture-MS | FSW = 0.0465
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L36 (RPL36A) |
AT1G33140 | PredictedAffinity Capture-MS | FSW = 0.0560
| Unknown | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G18730 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | RPL16B STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G74060 | PredictedAffinity Capture-MS | FSW = 0.0415
| Unknown | 60S RIBOSOMAL PROTEIN L6 (RPL6B) |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.0434
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G60070 | Predictedtwo hybrid | FSW = 0.3103
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT2G33560 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT4G32820 | Predictedin vivo | FSW = 0.0683
| Unknown | BINDING |
AT1G23900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.3665
| Unknown | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G60780 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.2332
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT2G17380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3687
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT3G23270 | PredictedPhenotypic Enhancement | FSW = 0.1333
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G19820 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT4G36210 | PredictedAffinity Capture-MS | FSW = 0.1078
| Unknown | UNKNOWN PROTEIN |
AT1G10730 | Predictedin vivoEnriched domain pairCo-expression | FSW = 0.1939
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT5G52850 | PredictedGene fusion method | FSW = 0.0539
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454