Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23570 - ( SGT1A protein binding )
13 Proteins interacs with AT4G23570Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G02500 | Experimental | FSW = 0.0726
| Class A:nucleusClass B:vacuoleplastidplasma membraneperoxisomeClass D:cytosol (p = 0.67) | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT2G04030 | ExperimentalAffinity Capture-Western | FSW = 0.3509
| Class B:vacuoleplastidnucleusmitochondrionClass D:cytosol (p = 0.67) | CR88 ATP BINDING |
AT5G51700 | Experimentaltwo hybrid | FSW = 0.2208
| Unknown | PBS2 (PPHB SUSCEPTIBLE 2) PROTEIN BINDING / ZINC ION BINDING |
AT4G11860 | PredictedAffinity Capture-MS | FSW = 0.2647
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOSOL NUCLEUS PLASMA MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF544 (INTERPROIPR007518) UBIQUITIN INTERACTING MOTIF (INTERPROIPR003903) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G229601) HAS 761 BLAST HITS TO 466 PROTEINS IN 133 SPECIES ARCHAE - 0 BACTERIA - 44 METAZOA - 311 FUNGI - 246 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 103 (SOURCE NCBI BLINK) |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT5G56030 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexSynthetic Lethality | FSW = 0.0619
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G52640 | PredictedAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-Westerninterologs mapping | FSW = 0.0161
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G42190 | Predictedinteraction predictionReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted Complextwo hybridReconstituted ComplexAffinity Capture-MStwo hybridinterologs mapping | FSW = 0.0385
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G38700 | PredictedAffinity Capture-MS | FSW = 0.1765
| Unknown | MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) DIPHOSPHOMEVALONATE DECARBOXYLASE/ PROTEIN HOMODIMERIZATION |
AT3G26500 | PredictedAffinity Capture-WesternSynthetic Rescue | FSW = 0.0270
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G06140 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT1G69670 | Predictedinteraction prediction | FSW = 0.1115
| Unknown | CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G11260 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5418
| Unknown | SGT1B PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454