Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23570 - ( SGT1A protein binding )

13 Proteins interacs with AT4G23570
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G02500

Experimental

FSW = 0.0726

Class A:

nucleus

Class B:

vacuole

plastid

plasma membrane

peroxisome

Class D:

cytosol (p = 0.67)

HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING
AT2G04030

Experimental

Affinity Capture-Western

FSW = 0.3509

Class B:

vacuole

plastid

nucleus

mitochondrion

Class D:

cytosol (p = 0.67)

CR88 ATP BINDING
AT5G51700

Experimental

two hybrid

FSW = 0.2208

Unknown

PBS2 (PPHB SUSCEPTIBLE 2) PROTEIN BINDING / ZINC ION BINDING
AT4G11860

Predicted

Affinity Capture-MS

FSW = 0.2647

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CYTOSOL NUCLEUS PLASMA MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF544 (INTERPROIPR007518) UBIQUITIN INTERACTING MOTIF (INTERPROIPR003903) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G229601) HAS 761 BLAST HITS TO 466 PROTEINS IN 133 SPECIES ARCHAE - 0 BACTERIA - 44 METAZOA - 311 FUNGI - 246 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 103 (SOURCE NCBI BLINK)
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0150

Unknown

IMPORTIN BETA-2 PUTATIVE
AT5G56030

Predicted

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Synthetic Lethality

FSW = 0.0619

Unknown

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G52640

Predicted

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

interologs mapping

FSW = 0.0161

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G42190

Predicted

interaction prediction

Reconstituted Complex

interologs mapping

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

two hybrid

Reconstituted Complex

Affinity Capture-MS

two hybrid

interologs mapping

FSW = 0.0385

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G38700

Predicted

Affinity Capture-MS

FSW = 0.1765

Unknown

MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) DIPHOSPHOMEVALONATE DECARBOXYLASE/ PROTEIN HOMODIMERIZATION
AT3G26500

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0270

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT5G06140

Predicted

two hybrid

FSW = 0.0357

Unknown

SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT1G69670

Predicted

interaction prediction

FSW = 0.1115

Unknown

CUL3B (CULLIN 3B) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G11260

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5418

Unknown

SGT1B PROTEIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454