Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G23650 - ( CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase )
27 Proteins interacs with AT4G23650| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G43810
   | Experimentalprotein array | FSW = 0.0544
| Class A:plasma membraneClass B:nucleuscytosolClass D:nucleus (p = 0.78) | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
| AT1G66410
| Experimentalprotein array | FSW = 0.0354
| Class A:plasma membraneClass B:nucleuscytosolClass D:nucleus (p = 0.78) | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
| AT1G27720
| Experimentalprotein array | FSW = 0.0581
| Unknown | TAF4B (TBP-ASSOCIATED FACTOR 4B) TRANSCRIPTION INITIATION FACTOR |
| AT5G21274
| Experimentalprotein array | FSW = 0.0544
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
| AT5G39670
| Experimentalprotein array | FSW = 0.3243
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT4G14640
| Experimentalprotein array | FSW = 0.0573
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
| AT3G51920
| Experimentalprotein array | FSW = 0.0480
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
| AT2G41090
| Experimentalprotein array | FSW = 0.0200
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
| AT1G35670
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5208
| Class C:plasma membranenucleuscytosol | ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE |
| AT3G51850
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8130
| Class C:plasma membrane | CPK13 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT1G74740
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.9655
| Class C:plasma membrane | CPK30 (CALCIUM-DEPENDENT PROTEIN KINASE 30) CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
| AT5G66210
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7576
| Class C:plasma membrane | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G17890
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8130
| Class C:plasma membrane | CPK16 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G12480
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3051
| Class C:plasma membrane | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G19450
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5747
| Class C:plasma membrane | CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G57530
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6316
| Class C:plasma membrane | CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32) CALCIUM-DEPENDENT PROTEIN KINASE C/ CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
| AT1G61950
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8000
| Class C:plasma membrane | CPK19 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G04720
| PredictedPhylogenetic profile method | FSW = 0.3145
| Class C:plasma membrane | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G09570
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3788
| Class C:nucleuscytosol | CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE |
| AT5G12180
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.8333
| Unknown | CPK17 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G36070
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4902
| Unknown | CPK18 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G19360
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5625
| Unknown | CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT2G41860
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6410
| Unknown | CPK14 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G23580
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7752
| Unknown | CDPK9 (CALMODULIN-LIKE DOMAIN PROTEIN KINASE 9) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT1G50700
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.7752
| Unknown | CPK33 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT4G04700
| PredictedPhylogenetic profile method | FSW = 0.2506
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G04695
| PredictedPhylogenetic profile method | FSW = 0.2688
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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