Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G24040 - ( TRE1 (TREHALASE 1) alphaalpha-trehalase/ trehalase )

47 Proteins interacs with AT4G24040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G76030

Predicted

Affinity Capture-MS

FSW = 0.0168

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.1364

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Synthetic Lethality

FSW = 0.0956

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G20260

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT4G36750

Predicted

Phenotypic Enhancement

FSW = 0.2268

Unknown

QUINONE REDUCTASE FAMILY PROTEIN
AT1G16030

Predicted

Phenotypic Enhancement

FSW = 0.0589

Unknown

HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING
AT4G35090

Predicted

Phenotypic Enhancement

FSW = 0.3040

Unknown

CAT2 (CATALASE 2) CATALASE
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.2011

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT2G42590

Predicted

two hybrid

FSW = 0.0321

Unknown

GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G38480

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0199

Unknown

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT2G38290

Predicted

two hybrid

FSW = 0.0392

Unknown

ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER
AT5G12480

Predicted

biochemical

FSW = 0.0122

Unknown

CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G39480

Predicted

Phenotypic Enhancement

FSW = 0.2486

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT3G43810

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410

Predicted

Affinity Capture-MS

FSW = 0.0095

Unknown

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT2G34450

Predicted

Phenotypic Enhancement

FSW = 0.3722

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G07260

Predicted

Phenotypic Enhancement

FSW = 0.2581

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT3G13445

Predicted

Phenotypic Enhancement

FSW = 0.0997

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT1G01210

Predicted

Phenotypic Enhancement

FSW = 0.1633

Unknown

DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN
AT5G05620

Predicted

two hybrid

FSW = 0.0091

Unknown

GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT3G29800

Predicted

Phenotypic Enhancement

FSW = 0.2258

Unknown

AAA-TYPE ATPASE FAMILY
AT2G17270

Predicted

Phenotypic Enhancement

FSW = 0.1379

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G29330

Predicted

Phenotypic Enhancement

FSW = 0.1778

Unknown

ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.1401

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G01020

Predicted

Co-purification

FSW = 0.1437

Unknown

ARV1
AT5G28060

Predicted

Phenotypic Enhancement

FSW = 0.1684

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G39100

Predicted

Phenotypic Enhancement

FSW = 0.2262

Unknown

SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT1G56590

Predicted

two hybrid

two hybrid

FSW = 0.0200

Unknown

CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN
AT1G02630

Predicted

Phenotypic Enhancement

co-fractionation

Co-fractionation

FSW = 0.1758

Unknown

EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8)
AT1G12130

Predicted

Phenotypic Suppression

FSW = 0.0727

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.1536

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G49520

Predicted

Phenotypic Enhancement

FSW = 0.2659

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G57620

Predicted

Phenotypic Enhancement

FSW = 0.1302

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G76920

Predicted

Phenotypic Suppression

FSW = 0.1616

Unknown

F-BOX FAMILY PROTEIN (FBX3)
AT2G23070

Predicted

Phenotypic Enhancement

FSW = 0.1697

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G17520

Predicted

Phenotypic Enhancement

FSW = 0.1457

Unknown

LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN
AT4G16710

Predicted

Phenotypic Enhancement

FSW = 0.1633

Unknown

GLYCOSYLTRANSFERASE FAMILY PROTEIN 28
AT1G08260

Predicted

synthetic growth defect

FSW = 0.1091

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT2G01070

Predicted

Reconstituted Complex

FSW = 0.1776

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK)
AT3G09800

Predicted

Phenotypic Enhancement

FSW = 0.2342

Unknown

PROTEIN BINDING
AT5G13840

Predicted

Phenotypic Enhancement

FSW = 0.1063

Unknown

FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER
AT5G52200

Predicted

Phenotypic Enhancement

FSW = 0.2661

Unknown

UNKNOWN PROTEIN
AT4G32900

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0180

Unknown

AMINOACYL-TRNA HYDROLASE
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.3196

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT1G16980

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

FSW = 0.0196

Unknown

ATTPS2 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G23870

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0543

Unknown

ATTPS9 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G19570

Predicted

Shared biological function

Co-expression

FSW = 0.0203

Unknown

CDA1 (CYTIDINE DEAMINASE 1) CYTIDINE DEAMINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454