Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G24160 - ( hydrolase alpha/beta fold family protein )
43 Proteins interacs with AT4G24160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedPhenotypic Enhancement | FSW = 0.0187
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G34480 | PredictedAffinity Capture-Western | FSW = 0.0392
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AB) |
AT4G21980 | PredictedPhenotypic Suppression | FSW = 0.0139
| Unknown | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0339
| Unknown | UNKNOWN PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0226
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | PredictedPhenotypic Enhancement | FSW = 0.1623
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT1G56050 | PredictedPhenotypic Enhancement | FSW = 0.1005
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT5G60540 | PredictedPhenotypic Enhancement | FSW = 0.1240
| Unknown | PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION |
AT1G49340 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0158
| Unknown | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
AT1G75170 | PredictedCo-purification | FSW = 0.0434
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT1G80050 | PredictedPhenotypic Enhancement | FSW = 0.1090
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT4G18800 | PredictedPhenotypic Enhancement | FSW = 0.0453
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT3G14980 | PredictedAffinity Capture-WesternAffinity Capture-Westernfar western blotting | FSW = 0.0383
| Unknown | PHD FINGER TRANSCRIPTION FACTOR PUTATIVE |
AT4G25340 | PredictedPhenotypic Enhancement | FSW = 0.0723
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT4G25780 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G20330 | PredictedPhenotypic Suppression | FSW = 0.0290
| Unknown | SMT2 (STEROL METHYLTRANSFERASE 2) S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE |
AT1G23460 | PredictedPhenotypic Suppression | FSW = 0.1140
| Unknown | POLYGALACTURONASE |
AT1G25260 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0464
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G27320 | PredictedPhenotypic Enhancement | FSW = 0.1287
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G35350 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1510
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G78770 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-MS | FSW = 0.1066
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT3G24495 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G04695 | PredictedPhenotypic Suppression | FSW = 0.0346
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0807
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0956
| Unknown | COX19 FAMILY PROTEIN |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.1058
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G32160 | PredictedPhenotypic Enhancement | FSW = 0.1106
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G32415 | PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT2G46070 | PredictedReconstituted Complex | FSW = 0.0347
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G12760 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0145
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK) |
AT3G22290 | PredictedPhenotypic Enhancement | FSW = 0.1237
| Unknown | UNKNOWN PROTEIN |
AT3G24010 | PredictedAffinity Capture-MS | FSW = 0.1090
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G58830 | Predictedsynthetic growth defect | FSW = 0.0134
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT4G27130 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.1403
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G13010 | PredictedReconstituted Complex | FSW = 0.0557
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G16980 | PredictedPhenotypic Suppression | FSW = 0.1362
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G25110 | PredictedReconstituted Complex | FSW = 0.0744
| Unknown | CIPK25 (CBL-INTERACTING PROTEIN KINASE 25) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G38890 | PredictedPhenotypic Suppression | FSW = 0.0069
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G58380 | PredictedPhenotypic Enhancement | FSW = 0.0333
| Unknown | SIP1 (SOS3-INTERACTING PROTEIN 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G27960 | Predictedinterologs mapping | FSW = 0.0794
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.0843
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT4G35450 | PredictedGene fusion method | FSW = 0.0097
| Unknown | AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454